Syngnathus scovelli (Gulf pipefish): 125970186
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Entry
125970186 CDS
T08785
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125970186 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125970186 (cnot1)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125970186 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125970186 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
125970186
NCBI-ProteinID:
XP_049578163
LinkDB
All DBs
Position
6:complement(17057496..17074127)
Genome browser
AA seq
2394 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSYNADLRGFAAQFIKQKLPDLLRSYIDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDVFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLAEFMQEVGYGFCNSLDECRNIIHQYGAREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFLIRDSKGLNIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVMALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LSDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSSQLPPETLATMLACLQSCAG
NVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVDPLTGMGAL
NLGTTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNTNPSTPFGGIGSLSSQLPGMD
SGPLGSGIGTGIGSSLGMPAGSTDPFSTRKMSTPSLNPPTFQQSKMKASDLSQVWPEANQ
HFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNINREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGTKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQVQAQSQQPGIPKAPQPGQTSTLVTTTTTTTTAAKTTTITRPTPSSFKKDVPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILHTDLEIKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVF
RPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSL
EEQLSAPKKEAKPPDEMLPVSTSGDFVPFPAPPSTVAATTTTPCTTTGPPTPQFSYHDIN
VYALAGLAPHININANIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQI
IRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLVSIAANLKNSFAAALRAPTPQ
QREMMEEAAARVAQENCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDP
VVLTYQAERMPEQIRLKVGGVDQKQLAVYEEFARNVPGFLPSNDLTQPTGFLAQPMKQQA
WATDDVAQIYDKCMADLEQHLHAIPQALSMNPQTQALRSLLEAVVLARNSRDGIAALGLL
QKAVEGLLDATSGADNDLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYK
YNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEA
DLFHTIETLMRTCAHSRANAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGITQASEY
DDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLC
TEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEASNTVTKINL
LNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNT
FHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNV
ELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRL
PDPFTPNLKVDMLSEINIAPRILTNFTAVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQV
SNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEG
RYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGL
LITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatttggtagacaatttg
acaaagaaaaactacagagccagccagcaagaaatacagcatattgttaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtcttttctcacatgtggatttcagtggcgat
ggtaaaagcagcggcaaggattttcaccagacacagtttctgatccaggagtgcgtgtcg
ctgatatcaaagcccaactttatctcgactctgtgctacgccatcgacaatccgctgcac
taccaaaagagtttgaaaccatctgcccacttattcactcaactaagtaaagttcttaag
ctcagcaaggttcaagaggtgatatttggccttgcactgctcaactcctacaacgcagac
cttcggggatttgctgcgcagttcataaagcagaagctccccgacctcttgcggtcatac
atcgacgcagatctcggcggaaaccaagaaggtggcttccaggacatcgctatagaggtc
ttacacctgctgctctcccatttactctttggccagaagggagccagcggggttggacaa
gagcagattgacgtcttcttgaagacactttgccgagatttccctcaggagcgctgccct
gtggtgctcgcaccactgttgtaccctgaaaaacgggacattctcatggataggatcctg
cctgactctggagagttagccaagaccataatggagagttctctcgcggaattcatgcag
gaagtcggctacggcttctgtaacagtctggacgagtgcagaaacataatccaccagtat
ggggcgagggaggtgacggccagccaggttgccagggtcctgggcatgatggcacgcacc
cactctggcctaactgatggcatccccctacagtcaatttctgcacctggaagtggcatc
tggagcgacggaaaggataagaatgacgggtcgcaggcacacacctggaatgttgaggtc
ctcatcgacgtggttaaagaagtgaatccaaacctgaacttcaaagaggtgacgtacgaa
ctggatcacgcaggattcctaatccgggatagtaagggcctgaatatcgtggtgtacggc
attcagcggggtttgggcatggaggttttccctgttgatctcatatatcggccatggaaa
cacgcagaaggacagttatcattcattcagcactctctaatgagccctgaagtgttctgc
ttcgccgactacccttgccacacagtagccatcgacatccttaaagcgccaccggaggat
gacaacagggagattgcgacatggaaaagtttggatttggtggaaagcctgctgaggcta
tcagaggtcggccagtacgagcaagttaagcaactcttcagcttccccatcaagcactgc
ccggatatgcttgttatggcgttgctgcagatctccacctcctggcatacgctgcgccat
gagctcatctctaccctaatgcctatctttctgggcaaccaccccaactctgctatcatt
ctgcactatgcctggcacggacagggacagtctccgtccatccgtcagttaattatgcat
tcaatggctgagtggtatatgagaggtgagcagtatgaccaagccaagttgtcccgcatc
ctggatgtggcccaagacttgaagtctctctcgatgctgctgaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgagtgacaaaattagagagcacggggaaccttttatccaagcttgcgtcacattcctg
aaacggcgatgcccatccattatggggggtctggccccagacaaggatcagcctaagagc
tctcagttgcctccagagaccttagccaccatgctggcctgtcttcagtcttgtgctggg
aatgtttcgcaagagctgtcggagaccatcctgaccatggttgcaaactgcagcaatgtt
atgaacaaagcccggcagccaccacctggagtcatgccgaaaggacgggccccgagcacc
agcagcctggatgccatttccccggttcaggtggaccctctgactgggatgggcgctttg
aatctgggcaccacggccacctcccacacccagagcatgcagggtttccccacctccctt
agttcggctttcagtaatccccagtcgccagcaaaggcatttccacctctctcaaacacc
aatccaagcacaccatttggcggtattggcagcttgtcctcgcagcttcctggtatggac
tctggtcccttgggctcaggcatcggcacgggtatcggttctagtcttggaatgccggca
ggaagcactgatccattcagcaccagaaagatgagcacaccaagcctgaaccctcctacc
ttccagcagagtaagatgaaggcctctgacctttctcaggtttggcctgaggcaaaccag
cactttagcaaggagatcgatgatgaagccaacagttacttccagcgcatctacaaccac
ccacctcacccgacgatgtctgtggatgaagttctagagatgctgcagaggttcaaagat
tccaacatcaacagggagcgggaagtgttcaattgtatgcttcggaacttgtttgaggag
taccgcttcttcccgcaatacccggacaaggagctgcacatcacagcctgcctgtttggc
ggcattattgaaaagggtctcgtcacctacatggccctcggccttgcactcagatacgtg
cttgaagccctaagaaaaccgtatggcaccaaaatgtattactttggaattgctgctctc
gaccggttcaaaaacagattgaaggattatccccagtattgtcaacatcttgcatcaatt
ggtcattttttgcagttcccccaccatttacaagagtgtgtgcagtatattgagtacggc
caacagtcacgggaccccccggtgaagatgcaaggctctatcaccaccccaggcagtctg
gcgctggcacaggtgcaagcccaatcgcagcaacccggtatcccaaaagcgccgcagccg
ggacagacgagcaccctcgtcacgaccacgacaaccactaccacggccgcgaagaccact
accatcacaaggccaacgcccagcagcttcaagaaggacgtgccaccctccataaacact
acaaatattgacactctactggtggccactgaccaaacggaaaggattgtagaacctcca
gagaatgtccaggagaagattgcgttcatcttcaataacctttctcagtcaaacatgaca
caaaaggtagaggaattgaaagagactgtgaaagaagagttcatgccatgggtgtctcag
tatctggtgatgaagcgtgtcagcattgagcccaatttccacagtctctactccaacttt
ctggacacactcaagaatcccgagtttgtcaagatggtcctcactgagacctacaggaac
atcaaggttttgttgacatctgacaaggccgctgccaatttctccgatcgctcattgctg
aagaacctgggtcactggctggggatgattacactggccaaaaacaaacctattctccat
acagatctggaaattaagtcactgctactggaagcctatgtgaaaggccaacaggagcta
ctttatgtggttccctttgtggctaaggttttggagtccagcctgcgaagcatggtgttc
aggccccagaatccttggaccatggccatcatgaatgttcttgcagagctacatcaagag
catgacctcaagcttaacctgaaatttgagattgaagttctctgcaagaacttgtccctg
gacatcaatgacctgaagccaggaaacctgctgaaggacaaggacaagcttaagagtctc
gaggagcagctttcggcaccaaagaaagaagcgaagcctcccgatgaaatgctcccagtt
tcgacatcaggagactttgttccgtttccagcaccaccctccactgtggctgccaccacc
accacaccttgcacaaccacggggccccccaccccacagttcagctatcacgacattaat
gtgtatgccttggcaggcctggcaccacacattaatataaatgccaacatccctcttcta
caagcccatcctcaattgaagcagtgtgtgaggcagtcagttgagcgtgccgttcaagag
ctcgtgcaccccgtggttgaccgctctattaaaatcgccatgacgacgtgcgagcaaatc
atccggaaggactttgccctggattcagaggagtcccgcatgcgcgtggcagcccaccac
atgatgaggaacctgacggccggcatggccatgatcacctgccgtgagcccctgctcgtc
agcattgccgcaaatctgaagaacagttttgcggctgcactgagggcgccgactccccag
cagagggaaatgatggaagaagctgcagccagggttgctcaggagaactgtgaactggca
tgttgctttattcagaagaccgctgtagagaaggccggccctgaaatggacaaaaggctc
gccacggaattcgagttgaggaagcatgcgcgccaagaagggcgtcggtactgtgatcca
gttgttttgacttaccaggctgaacgtatgcctgagcagataagactaaaggtgggagga
gtcgaccaaaagcagctcgctgtgtacgaggagtttgcaagaaacgttccgggtttcttg
ccaagtaatgatcttacccaaccaaccggtttccttgctcaaccaatgaagcaacaagct
tgggccacggatgatgtcgcccaaatctatgacaagtgcatggcagacttggagcagcat
cttcacgccatccctcaggcgctctccatgaatccccagacccaagcgttgcgtagcctt
ctggaggctgtggtcttggcaagaaactccagggatggtattgcagcgcttggactgctg
cagaaggctgtggaaggtcttctggatgccaccagcggggccgataatgacttgctgctc
cgctacagagaatgtcacctgttggttctgaaagctctccaggatggacgtgcatacgga
ccacagtggtgcaacaaacagatcaccaggtgtctcattgaatgccgggatgagtacaag
tacaatgtcgaggcggtggagcttttgattcgaaaccatcttgtgaatatgcagcagtat
gatctgcacctggcccagtcgatggagaacggacttcactacatggccgtggcgtttgcc
atgcagttagtgaagctgctgcttgtggacgagcgcagcgtcagccacgtcaccgaagcc
gacctcttccacaccattgagactttgatgaggacctgcgcacactctcgagcaaatgcg
ccagaaggtcttccccagttgatggaagttgtgcgctccaactacgaggcaatgattgat
cgggcccacggcgggccgaacttcatgatgcactccgggatcacccaagcgtcggagtac
gatgatccgcctggcctgcgggaaaaggccgaatatctcttgagggaatgggtcaacttg
taccactcagccgccgctggccgggacagcaccaaagcattctctgcttttgtaggccag
atgcaccagcagggtattctgaagacggatgacctgatcacgcgcttcttcaggctgtgc
actgagatgtgtgtggaaattagttatcgcgcgcaggctgaacagcagcacaacccggcg
gccagcgcagccatcatcagagcaaagtgctaccacaacctcgacgcctttgttcgactc
atagccctgctcgtcaaacattctggagaggcttccaacaccgtgaccaagatcaacctc
ctcaacaaggtgctgggaatcgtcgttggggtgttgatccaggatcacgatgtccgtcag
acagaattccagcagctgccctaccaccgcattttcatcatgttgctgttggaactcaac
gctcctgagcacgtcctggagactatcaacttccagacgctcactgccttctgcaacacc
ttccacatcctgagacccaccaaggcaccgggttttgtgtacgcttggctcgaactgatc
tcccatcgcatcttcatcgcccgcatgcttgcgcacacgccacagcagaagggttggccc
atgtacgcgcagttgctcattgatctcttcaagtacctggcacctttccttagaaatgta
gagctcaacaaacctatgcaaatcctctacaagggcacactgagggtactgctggtcctg
ttgcacgacttcccagagttcttgtgcgattaccattatgggttctgtgacgtgatcccg
cccaactgcattcagctgcgcaacctcatcctgagtgcctttccacgcaacatgaggctc
cccgaccctttcacacccaatctcaaggtggacatgctgagtgagatcaacatcgctcct
cgcatcctcaccaacttcacagcagttatgccttcccagttcaagaaggatctggactcg
tatctgaaaacgcgttcacccgtcactttcctctcagagctgcgcagcaatctacaggtt
tctaacgagccaggaaaccgctacaacatccagctgatcaacgccttggtgttgtatgtg
ggcacgcaggccatcgcgcacatccacaacaagggcagcacgccctccatgagcaccatt
acccactctgcacacatggacatcttccagaacctggctgtggatttggacactgaggga
cgttacttgttcttgaacgccatcgccaaccagctgcgctacccaaacagccacacgcat
tatttcagttgcaccatgctctatctctttgccgaggctaacactgaggccatccaggag
cagatcaccagggtccttttggagaggctgattgtgaaccggcctcacccgtggggtctc
ctcatcaccttcatcgagctcatcaagaatcccgccttcaagttctggagccatgacttt
gtgcactgtgcccctgagattgaaaagttgttccagtcggtggctcagtgctgcatgggt
cagaagcaggcccagcaggtgatggaaggaactggcgccagctag
DBGET
integrated database retrieval system
