Syngnathus scovelli (Gulf pipefish): 125970408
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Entry
125970408 CDS
T08785
Name
(RefSeq) cyclic nucleotide-gated channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
125970408
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125970408
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
125970408
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
125970408
NCBI-ProteinID:
XP_049578629
LinkDB
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Position
6:9522032..9540439
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AA seq
1299 aa
AA seq
DB search
MFNWVVKVVPHPPGPPQTDADIKTPAGIKQELPKNRDVKSPPLKGTDDASVDSQSQAGVL
GWLSNSFASTLPQPAGSPHLDNKSIGDGERSGVMGWVTQSLTKVLPQPDDKYREDNNGNE
EEHTEVCEVATMPDFDPLPHIPVVEMLSEEEAEENEEVFPPNVVTWLKQKIPQPVLIPAS
SVPIEPKAKKTPRSSLDKSTYFTFPVLSPPPESLSGITLDTDNKASGMVGWFVSGLGLKL
PQPVLPPQNDAEATADVLKKASTKLNPDMVLEDVDSDSEGHMTSAHTQQIIAQRSSSMHQ
NKCESKQASHPALAPVLQEDAETQTGRWTPFIESIRREAEDVALATMEERLQQERIEMTI
MAAEVARQTAEMAVRQLASEGQSIKLSLGSQEMLEEPDTELQVLEEETPVTEQIIVKEEL
LAVEEQEESNAEEETGIEEGEPEKEAEPRGISPSPPPRPEPVKVSEPECVQQAVVQSREE
VPQAEPVTQQPQKADKDIQGTKTDEKEDATEDDCGDSSRLSLRPAVNIEDFDSHCESAAE
GKAEQLLTPQDPKLTTLTVPVTPAGGRPSSKGDKDGGNRRTVRTKIRKLQSQSEDDEEEA
GIPIRAWASQSSIHSSDDPLRERPSSSASQTSAAVNERLQELVRMFKERTEKAKEKLIDP
DSSDEDSIIPSPQKAQAPHPAPNTLRVGKDVSEEPPGPSGGGADSEPEEKSERQVKSPRR
TRAFVRFRFPASIDPFTNLMYVLWMFLVSLAWNWNVWFIPVRWAFPYQTPSNIYYWLLTD
YLCDLIYILDITVFQPRLQFIRGGDIVCDTKEMRKNYMKSKRFKFDVASLVPLELFYFKT
GINPLLRLPRILKLNSFFEFNERLEAILTKAYVYRVVRTTTYLLYCLHCNACLYYWGSAF
KGLGSTKWVYDGKGNSYIRCYYFAVKTLITIGGLPDPTTLFEIVFQLINYFVGVFVFSIM
IGQMRDVVGAATASQTNYRTCMDNTIKYMSSYRIPKDVQNRVKTWYNYTWQSQGMLDEQE
LLTQLPDKMRLDIAIDVNYSIISKVPLFQGCDQQMIFDMLKSLRSVVYLPGDYVCKKGEV
GREMYIIKAGEVQVVGGPDGKTVFVTLGAGSVFGEISLLAVGGVNRRTANVIAHGFANLF
ILDKKDLNEILVHYPESKKLLRKKTRKMLTKEKKPDPKEEAKEPAKVQVTPVRPETPKLL
RAALEMTEKSTGLKGAMAQVKDKTNKSSVSLQASISSPVPSPVSTPSVTPAISTTFLSTF
ASFNDNSDMSLSLTEDVLPVDHRQECEREEEEEEGGIKV
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactgggtggtgaaagtggtccctcatccccctggacctcctcaaacagatgca
gatatcaagactcctgctgggataaaacaggaactccccaaaaacagagatgtcaagagt
cctccactgaagggtacagatgatgcttcagtagacagccagtcccaggccggagtctta
ggttggctgtccaatagctttgcaagcaccctgcctcagcctgccggatcacctcacctc
gacaacaagtctattggggatggagaaaggtcgggagtgatgggatgggtcactcaaagt
ctgacaaaggtgctgccacagcccgacgacaagtacagagaagacaacaatggcaacgaa
gaggagcacacagaggtgtgcgaagttgcaacaatgccagattttgacccactcccgcac
atccctgtagtggaaatgttatcagaagaagaggcagaggagaatgaggaggtgttcccc
ccaaacgtggtgacgtggctcaagcagaagatccctcagccagttctaatccccgctagt
tccgtgcccattgagccgaaagccaaaaagactcctcgctcatctttggacaaaagtaca
tactttacattccctgttctttctccaccacctgaatctctaagtggaatcacactggac
actgataacaaggcctcagggatggttggctggtttgtgtcagggcttggcttgaagctc
cctcagcctgttcttccaccccaaaatgacgccgaggccacagcagatgttctgaagaaa
gcctctaccaaactcaatcctgacatggtgttagaagacgtggattcagacagcgagggc
cacatgacctcagcccacacacagcagatcatagcacaaaggagttcctccatgcaccaa
aacaagtgtgagtcaaagcaagcatcccacccggctttggctccagttcttcaggaggat
gctgagacccagacaggccgctggacaccgttcattgaaagcatcaggcgggaggctgag
gatgtggccttggccaccatggaggaacgtttgcagcaggagcgcatagagatgaccatc
atggccgcagaagtggcgagacagacggccgagatggccgtaagacagctggccagcgag
ggtcagtccatcaaactatcactggggagccaagagatgctggaggagcccgacacagaa
ctgcaagttttagaagaagagacaccagtgactgagcaaatcattgtaaaagaggagctt
cttgctgttgaagagcaggaagaaagcaacgctgaggaggaaaccggcattgaagaagga
gagccggaaaaggaggcagagccacgagggatatccccgtctccccctccgagacctgaa
ccagtgaaggtttctgaaccggagtgcgttcaacaagcagtggtccagagccgagaagaa
gttccacaggctgagcctgtgacccagcagccacagaaagctgacaaagacattcaaggc
accaagactgacgaaaaagaggatgccactgaagatgattgtggggatagttctcgactc
agcctccgtccagcagtcaatatcgaggatttcgactcgcactgcgagagtgccgcagag
gggaaagcggagcaactcctcaccccgcaggatccgaaactaacaaccttgactgtcccc
gtcaccccagcaggagggcgaccaagcagcaaaggagataaagatggaggaaatcgtagg
actgtccgcacaaaaattaggaagctgcaatctcaaagtgaagatgatgaggaggaagca
ggcatcccaatcagagcctgggccagccagtccagcatccacagctccgatgaccccttg
cgagaacgtccgtcatcgtctgccagtcagaccagcgcagcggtcaatgagcgtcttcag
gagctggtccgcatgtttaaagagaggacagagaaggcgaaagagaaactcatagaccct
gacagctctgatgaagacagcatcatcccctctcctcaaaaggcccaagcgccgcacccc
gctcccaatacgctacgtgtgggcaaggacgtttctgaggagccccctggtccttcagga
ggaggagccgacagtgagccagaggagaagtccgagcggcaggtgaaatcccctcgacgg
acacgagcctttgtgcgcttccgcttccccgccagcatcgaccctttcaccaatttaatg
tatgtcctgtggatgttcttggtatctctggcgtggaactggaatgtttggtttatccca
gtgcgttgggctttcccctaccagacaccaagcaatatttattactggctgctgactgat
tacctttgtgaccttatttacatcctggacatcaccgtcttccagccacgtctgcaattt
atccgaggaggggacatagtttgcgacacaaaagaaatgagaaagaattacatgaaatcc
aaacgttttaagtttgatgtggctagtcttgttccgctggagctcttctatttcaaaact
ggcatcaaccctctcctgcgcctgccccggatactcaagctcaactcattctttgaattc
aatgagcgtttagaggctatcctgaccaaagcctacgtctacagggtggtccggaccacc
acgtatctcctctactgtctccactgcaacgcctgcctctactactggggctctgccttc
aaaggattgggttccactaagtgggtgtatgacggcaaaggcaacagttacattcgctgt
tactattttgcggtgaagaccctcatcactatcggggggttgccagatcccactaccctg
tttgagatcgtctttcagctcatcaactactttgtgggagtctttgtcttttctatcatg
attgggcagatgcgagacgtcgttggggcagccacagctagtcagacaaattaccgtacc
tgtatggacaacaccattaaatacatgtcttcgtatcgcatccccaaagatgtccagaac
agagtcaaaacctggtacaactacacttggcagtcacaaggcatgctggacgagcaggag
ctgctgactcagttgccagataagatgcgtctggacatcgccattgatgtcaattactcc
atcatcagcaaagtccctctctttcagggttgtgatcaacagatgatctttgacatgtta
aagagcctgcgctcagttgtttacctgccaggggattatgtctgcaaaaagggagaggtc
ggtcgggagatgtacatcatcaaagcaggggaagtgcaggtggttggtggaccggatggg
aagacagtttttgtcactcttggtgctggctccgtctttggcgagattagtttactcgca
gtgggcggggtcaacaggcgtacggctaacgtgatcgctcacggctttgccaatcttttc
atcctggacaagaaagacctgaacgagattttggtccactatcctgaatccaagaaactg
ctgcgtaagaaaaccaggaagatgctcaccaaggagaagaaacctgatcccaaagaggaa
gccaaggagcctgccaaggtccaggtcactcctgtaaggccagagactcccaagctgcta
agagcggccttagagatgactgagaaatccactggactcaaaggagccatggctcaagtt
aaagacaagaccaacaagtctagcgtctcgctgcaggcatccatctcgtcaccggttcca
tcccccgtctccacgccttcagtcactcccgccatctccaccacgtttctctccacattt
gccagcttcaacgacaactcggatatgtcgctctctctcacggaggacgtgctgccagtg
gatcacagacaggagtgtgagcgagaggaggaagaggaggagggtgggataaaggtgtga
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