Syngnathus scovelli (Gulf pipefish): 125973386
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Entry
125973386 CDS
T08785
Symbol
arhgef18b
Name
(RefSeq) rho guanine nucleotide exchange factor 18 isoform X1
KO
K21066
A-kinase anchor protein 18
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
125973386 (arhgef18b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125973386 (arhgef18b)
Membrane trafficking [BR:
sscv04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
125973386 (arhgef18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
C1_1
SOS1_NGEF_PH
PH_13
PHD
C1_2
Motif
Other DBs
NCBI-GeneID:
125973386
NCBI-ProteinID:
XP_049583475
LinkDB
All DBs
Position
10:6554610..6582244
Genome browser
AA seq
1637 aa
AA seq
DB search
MADTPLNNSWPSISKQWMKRFSLKRASECKSYSEPIEQTSGHAAKQASGHSSGQQHVQLP
RGTSSPSPSPPSITEDVFFGGTNEDQDASFVVSDSEVKGVEVSSSADNLQGLGSSLWDSD
YFRDLEVNLDEPLKAISPDLNSLTTVPNLTELASSEEAPGNLVVTKLSPNVFPSCVIDSH
DSSGVSLSLTIDLDGLLGSMETTPTETGSCNQGNTVHLNGDLEVDSFPNLVRSMSTSRRH
SWGVPVAPINLGKRLSLDTMPLDSDGDEDEAEHNEVFQSNEQKTENCPLDETDGLKERLS
CLVTKTDGVPGKQVYSRADILATDECSRAAHVSRIVQTSKEAARAAGAEEFDPEEHLHSN
EGQSHIAKRRNNKSNVKDSENVTWYEFLSKENEEEDDRSEKVEKGTKVKRTLSSLRNRVT
GSFNKDKGKNREKEQQRGKEKGKEAKKSEFSQSNGHLLVLGTFSSCASCSLCGKTLQKNH
SLQCMNCAVNVHRSCKSLLSECTSIKNKRDSLSRTGPSGSPYLAAKERQREQEQSPQILN
GHAAFLSSLGMTIIPRGSSNQLIGTHNIASSGTPAFNPGPSLRHHSSSGSLLGEMDETDT
LRLKRCNDDAISLVASTTESIIVEEAHYAAVRADLECDAQDLEAESWSLAVDQQFVKRHS
KEAVKRQDVIYELMQTEMHHVRTLKIMLRVYIRELKDNLQMDSSRLECLFPRVETLLELH
THFLSCLRERRRESIVSPTECNYTVDRIADILIAQFSGDVGEKMKDSYGDFCSHHTEAVN
YYKEQMQTNKRFHSIVRKINNLSIVRRLGVPECILLVTQRITKYPALVERILHSTQEGTE
EHTELNRALSLIKYTIAQVDALVNLHEKTCRLRDIHGKMEPKALGKIKDGRVFRREDLAQ
GRRRLLHEGTVNWKAASGRLKDILAVLLSDVLLLLQEKDQRYVFAAVDNKPSVISLQKLI
VREVAHAERAMFLICASSNEPEMYEIHTTSKEERNTWMTQIRQAVESCPHTEERLFSEEE
EARASRLKEFQERLSQKDAVIVQALSEKLQLFADMAESVVGLEDTASRPKLLLRGDASDL
QQGETLLKGAITEVENLQNLLQSGVRGDNLSSQQDEGSSSGLLPRRAGTFGGYDSNPTIL
TKNGNLKKNFTGESRNRDRSQRASSDPQLKDLCGSQTLEQTVDETCNTPARWNRIWSNSF
PEAEFFDKVLMLSQRLYSLQAIIAQQDSHIELQRVSLTERASLPGRHRGNVLLEQEKQRT
LALQREELASFHKLQSQHRQEQQRWEKERGKHRQLVEATEARLRQREEECRRLEERLAEE
RVELERQRETYQQDLERLRESTRAVEKEKERLEHQKKIKRKTIEVAPMSGSLNGELLLSS
GLSSSPGLSDKPLPPKSLVRGSMSVAPADYSERPEVPLRRDASSSTLPLKTEVPLHLFST
TNQQHKLVGVQQQIPTKLAALSSGKGKGVKGGKASQRTDSTASVDMKQILPLKLSARDDS
TFKAKCSVSPHQQAPLSVSPLPPSFHHLGDHQQNPLDAFGPDSQSTGISGSQPGTIQKPP
VPPAKPSLQSSVQTPAIAPHSHSTASPHFLAQVQPQGLGPNPHVLVQGLGHSVPLPSPPP
PYNINTEDLNKEDVIFF
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atggcagacactccgctcaacaactcctggccatccatctccaagcaatggatgaagcgc
ttctccctcaagagagcctctgagtgcaagtcatatagcgagccaatcgaacaaacaagt
ggacatgctgctaaacaagcgagtggacattcaagcggacaacagcatgttcagctaccg
aggggaacatcttcaccctctccatcgccgccctccatcacagaagatgtcttttttggg
ggcaccaatgaggatcaggatgcatcctttgtagtgagtgactctgaggtgaaaggtgtg
gaggtaagcagcagcgcggacaacctgcaaggcctcggctcttccctttgggactcggac
tacttcagagacctggaggtgaatcttgacgagcctttgaaagccatcagtccagacctg
aactccctgaccacagtgcccaatctgactgagctagcctcatccgaggaagcgcccggc
aacctcgtggtcaccaagctgagccccaacgtcttcccaagctgtgtgattgacagccac
gactcctcgggggtctctcttagcctgaccattgatctggacggactgttgggatcgatg
gaaacaacgcccactgaaacaggatcgtgtaaccagggaaacacagtgcatttaaatgga
gatcttgaggttgacagttttcctaatttagtgagatccatgtcgacctcacgaagacac
agctggggtgtccccgttgcacccatcaacctgggaaagagattgagtctcgacacgatg
cccttggacagcgatggagatgaggacgaagcagagcacaatgaggtcttccagtccaac
gagcagaaaactgaaaactgtccactggatgaaacagacggtctcaaagagaggctctcc
tgtctcgttaccaagactgatggtgttcccggaaagcaagtgtattcccgagcggacatc
ctcgccacggacgaatgttctcgtgcagcgcacgtctctcgaattgtgcagacctccaaa
gaggcagcgagggcagcaggagccgaggagtttgaccctgaggaacacctccactccaat
gaggggcagagccatatagccaagcggaggaacaacaaatccaatgtcaaggactcagaa
aatgtaacgtggtacgagttcctctctaaagagaatgaagaagaggatgaccgaagtgaa
aaggtagaaaaaggaaccaaggtaaagaggacgctcagctcattgaggaacagggtgact
ggctccttcaataaagataagggtaagaaccgagagaaagagcagcaaaggggtaaggag
aaggggaaggaggccaagaaaagcgagttcagtcagagcaacgggcatcttttagtgctg
ggcactttttccagctgtgccagctgctctctgtgcggcaagactctgcagaagaatcac
agcttgcagtgcatgaattgtgctgtgaatgttcacaggagctgcaagtctctgctcagt
gagtgcaccagcatcaagaacaagagagattctttatcaagaacaggcccgtctggatcg
ccttatcttgcagcaaaagagcgccagagagagcaggaacagtcaccacagatcctcaat
ggccatgcggcttttctcagctcccttggcatgaccatcatccctcggggatcaagtaac
caactgattggaacacataacatcgcctcttctggaactcctgctttcaaccccggcccc
agcctacgccatcacagcagctcgggatctctcctcggggagatggatgaaacggacact
cttcgcctgaagcgctgcaatgatgacgcaatctcactcgttgcatctactacggagtct
atcatagtagaagaagctcactatgctgcagtgcgagctgatctggagtgtgatgctcaa
gatctggaagcagagtcttggagtttggcggttgaccaacagtttgttaagagacactct
aaagaggccgtgaagaggcaagatgtcatatatgaactgatgcagacggaaatgcaccac
gtacggacactgaagataatgctccgtgtttacatccgagagttgaaggataacctccag
atggattccagcagacttgaatgcctcttcccacgcgtggaaaccctcctcgagctccac
acgcatttcttatcctgtctcagagaacgcaggcgagaaagcattgtttcgcccactgag
tgcaactacacggtggacagaatagcagacatactcattgcccagttttcaggggatgta
ggtgagaagatgaaggacagctacggtgatttctgcagtcaccacaccgaagctgtcaac
tactacaaagaacaaatgcaaacaaacaaaagattccatagcatcgtacggaaaatcaac
aacctgtccatcgtgcggaggctgggagtgcctgaatgtattctgttggtgacacagcgc
attaccaagtacccggcactagtcgagcgtattctgcacagcactcaagaggggactgaa
gaacacacagagctgaaccgcgcactaagcttaattaaatacactattgcccaagtggac
gctttggttaatctgcacgagaagacgtgtcgccttcgtgacatccacggcaaaatggag
ccaaaagcactgggcaaaatcaaagatggccgagtgtttcgccgcgaagacttggcgcag
ggtcgaagacgtcttctgcacgagggtactgtcaactggaaagctgcctctggcagactc
aaagatattcttgcagttctcctttctgatgtgctcctgctgctacaagagaaggatcag
cgatatgtatttgcagcggtggacaacaagccatcagtcatctcccttcagaagttaata
gttcgggaggtggcccatgctgagagagccatgtttctgatctgtgcttcctctaatgag
ccggaaatgtatgagatccacaccacctccaaggaagaaagaaacacttggatgacacaa
atacggcaagctgtcgaaagctgtcctcatacagaggagaggctcttcagtgaagaggag
gaagctcgagcttcaaggttgaaagaatttcaagaacgtctgagccagaaggatgccgtg
attgtccaggcactctctgagaagctccaactttttgcagacatggcagagtctgttgta
ggtctggaggacacagcttcccgccccaagcttcttttacgaggtgatgcctcggatctg
cagcagggggagaccttgctcaaaggagccatcactgaggtggaaaacctccagaatttg
ctccagtctggagtgaggggtgacaatctgtcatcacaacaagatgaagggagcagctct
ggactcctgcccaggagagcaggcacctttgggggctacgacagcaaccccaccatcctc
actaagaatggcaatttgaagaagaactttactggcgagtccagaaacagagaccgaagc
cagcgggccagctctgaccctcagctcaaagatctttgtggcagccaaactctggagcag
acggttgatgagacttgcaacacaccggcaagatggaaccggatctggtccaattctttc
cctgaggcagagttctttgacaaagtattaatgctttcccaaaggctctacagtctgcag
gccatcatagctcagcaggacagccacattgagctgcaacgtgtctcactaacggagcgc
gcctcactgcctgggcgccaccgcgggaacgtgctcctggagcaggagaagcagcgcacg
ctggccctgcagcgagaggagctcgccagcttccacaaactgcagtctcaacatcgccag
gaacagcagcgctgggagaaggagcgagggaagcaccgccagcttgtggaggccacagag
gccaggttgcggcaaagggaggaggaatgcaggcggctggaggagcggctggcagaagag
agggtggagttggagaggcaaagggagacgtaccaacaagacctggagaggctcagagag
tccactcgggcagtagagaaagagaaggaacgcctggaacaccagaagaagatcaagagg
aaaaccattgaggtggcgcccatgtccggcagtctaaatggggagctcctcttatcttct
ggcctcagcagctctcccggcctctcagacaaacccctgcccccgaagtccctggtgcgt
ggcagcatgtcggtggcgccggccgactactcggaacggcccgaggtgccgttgcgacga
gacgccagctcctccaccctgccgctgaagacggaggtgccactgcatctcttcagcacc
accaaccagcagcacaaactagtgggggtgcagcagcagatccccaccaagctggccgcc
ctcagcagcggcaaaggcaaaggagtgaaaggcggaaaagcctcgcagcgcactgacagc
actgcctcagtggacatgaagcagattctccccctcaagctctcggcgcgtgacgacagc
accttcaaagctaagtgctcggtcagcccccaccagcaagcaccgctgtctgtgtctcct
ctccctccctccttccatcatcttggagatcatcagcaaaaccctttggatgctttcgga
ccggattctcaatccaccgggattagcggcagccaaccaggaactatccagaagcccccc
gtgccgcctgccaaaccctctctgcagtcttctgtgcagactcccgccatcgcgccccac
tcgcattccaccgcgtcgccccacttccttgcccaggtgcagccgcaaggtctcggcccg
aacccccacgtgctcgtgcagggcctcggccacagcgtgccgctcccttcgccgccgccg
ccctacaacatcaacacagaagacctcaacaaggaagacgtcatcttcttctaa
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