Syngnathus scovelli (Gulf pipefish): 125991642
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Entry
125991642 CDS
T08785
Name
(RefSeq) antigen peptide transporter 2
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv02010
ABC transporters
sscv04145
Phagosome
sscv05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125991642
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125991642
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125991642
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125991642
Enzymes [BR:
sscv01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
125991642
Transporters [BR:
sscv02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
125991642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_21
Spore_III_AA
AAA_22
AAA_30
nSTAND1
AAA_16
AAA_25
Sterol_MT_C
nSTAND3
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
125991642
NCBI-ProteinID:
XP_049615812
LinkDB
All DBs
Position
21:10197911..10201765
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AA seq
703 aa
AA seq
DB search
MSCAVLCGFLLLLLLVDAALTWSLWHGLLGGAAAAEQWPRAWAAAALKWALLHAVVHAAA
VAKNQRAVLGRLATLLVLLPTVLQRGLEPPGLGALLQVALCSGLSCLCWEAGFGGGGGSA
PESQPAPDAGLLLTRLLGYLRPNQLSLMAGFGVITLAVACDTLVPLLQGTVTDVLRDGAL
DSAFYSALGTLVFFSAGSCLFSGLRSRFFKMAHACLNKRLKVALFRSLLAQEVLFFQEND
PGSLCSRLHSDVNKMGLTVGLNANAVLRSSVKTVLMLAAMLYLSRPLTALACIEIPVMAA
LQRRQVRCHKESKEQKQDSLARLKELSHQSLGGIRSVQSFRGQSHEAQRFHRELGRLRDI
NVRDGRHKAVFKLLSRFGSLATKVAMLLAARSLVSGGRLSTGTLLTFFLFRKPMSHNLKE
IFVCYGDTLATLGIISKVFSYLDRQPKCRPAGQLAPEALRGQVVFRNVTFGYPSVSPEKP
ALKDVSMVLEAGKVTALVGPSGSGKTSCAGLLKRLYEPQRGDILLDGRPLHAYGNAYLHG
KVVAVPQNPVVLRGSLRYNVEYGLGPCRTEQLQEAAAKIKAERLLAKLDTAEAQADADEG
GAHLSEGEKQSVALLRALLRQPRVLILDEATSQMDVHAQQAVLEEALRCGCTVLMVAHRL
NCAERAHRIIFMEDGVVMEQGTHVQLMAKGGRYWQLRKELLDH
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgccgtgctttgcggtttcctgctgctactgctgctcgtggacgcggcactg
acgtggtccttgtggcacggcctgcttgggggggcggcggcagcggagcagtggccccgg
gcctgggccgccgcggcgctcaagtgggcgctcctccacgccgttgtgcacgcagcggcg
gtcgccaagaatcagcgggcggtgctaggcaggctggccaccctgctcgtcctcttgccg
acggtgctccaaagaggcctcgagccccccgggttgggcgctctgctgcaggtggcgctg
tgctcggggctgagctgcctatgttgggaagcgggcttcggcggtggcggagggtcggcg
ccagagagccaaccggcgccggacgccggcctcctgctcaccaggttgcttgggtacctc
agacccaaccagctttccctgatggcgggcttcggcgtcatcaccctagccgtggcctgc
gacacgctggtcccgctgttgcagggcacggtgacggacgtgcttcgggacggggcgctg
gactccgctttctactcggcgctgggaacgctggtgttcttctcggcgggcagctgcctt
ttctcgggtttgcggtctagattcttcaagatggcgcacgcttgcctcaacaagcgcctg
aaggtggcgctgttccgctcgctgctggcccaggaagtgctcttcttccaggagaacgat
ccaggcagtctctgttcccgcctgcactcggacgtgaacaagatgggcctgacggtgggg
ctcaacgccaacgccgtgctacgcagctccgtcaagaccgtcctgatgctggcggccatg
ttgtatctgtcgcgtccgctcacggcgctggcgtgcatcgagatccccgtcatggccgcg
ctgcagagacgacaagtccgctgtcacaaggaatcaaaggagcagaagcaggacagtctg
gctcgcctcaaagagctcagtcatcagtcgctgggcggaatccgcagcgtccaaagtttt
cgcggccaatcgcacgaagcccaaagattccatcgagaactcggacggctcagagacatc
aacgtgcgagacggacgacacaaagctgtcttcaagctcctgagtaggtttggcagtttg
gccaccaaggtggcgatgctgctggcggctcgctccctggtgtctggcgggcggctgagc
accgggaccctcctgaccttcttcttgttccggaagcccatgtcgcacaacctcaaggag
atctttgtgtgctacggggacacactggccacgctgggcatcatctccaaagtcttcagc
tacctggaccgtcaacccaagtgccggccggctggccaactggcgcccgaggcgctccgg
ggccaggtggtgttccggaacgtcacctttggctacccttccgtgtcgccggaaaaaccg
gcgctgaaggacgtgtccatggtgctggaggcgggcaaggtgacggccctggtgggcccg
tcgggtagcggaaagacgtcctgcgcggggctcctcaagcgactgtacgagccgcagcgg
ggcgacatcctgctggacggacggccgctgcacgcctacggcaacgcctacctccacggc
aaggtggttgccgttccccagaatccagttgtgctgcgcggctcgctgcgctacaacgtg
gagtacggcctggggccctgccgcacggagcagctgcaagaggcggccgccaagatcaaa
gccgagcggctgctggccaagctggacaccgccgaggcccaagcagacgccgatgagggc
ggcgcgcatctgtcagagggcgagaagcagagcgtggcgctgctgcgggccctgctgcgt
cagcctcgggtactcatcctggacgaggccaccagccagatggacgtccacgcgcaacaa
gccgtcttggaggaggcgctcaggtgcggctgcacggtcctgatggtggcgcaccgtctg
aactgcgccgagcgagcccaccgcatcatcttcatggaggacggcgtggtgatggagcag
ggcacgcacgtgcagctgatggccaagggggggcgctactggcaactcaggaaggagctc
ttggaccactga
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