Syngnathus scovelli (Gulf pipefish): 125994359
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Entry
125994359 CDS
T08785
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125994359 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125994359 (skic3)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
125994359 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_11
TPR_14
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_16
TPR_17
TPR_9
ANAPC3
ChAPs
ARM_TT21_C
COG4_N
TPR_15
Motif
Other DBs
NCBI-GeneID:
125994359
NCBI-ProteinID:
XP_049619613
LinkDB
All DBs
Position
3:complement(23902397..23911570)
Genome browser
AA seq
1566 aa
AA seq
DB search
MSSKEVKAALKSAKEAIKSKEFKEALKHCKTVLKLEKNNYNAWVFIGLAASELDQPDQAQ
TAYKKAVELEPEQLLAWQGLSNLYEKTDQWDFKIELPNVYQKLVDLYASSDKNKCYEMIG
KLQEIHQSDKEYSKLAKVWLQLIQLKEDDGADKQSLLQLWQQMAQLLSNCLADNEQDGEI
RKHLSTALEKALLVVEPTPGEEHRKLSVDFIKCLSKLPEEEEKMKHACESMLSLYPAQSY
PLEVLCSHYLEKGVSSEEADSCFSRLRDLAPGNAWCDLGFGMKALQEGRYKDAIKDLAQG
LKKRNFNPAWCSLAEAQLKVHKYSDCSKSCAQGLTACVPGDKELKIRLLKLRLEALVRSG
EEKAAEQALEMFSLVPDADKDPSLVALKGRAYLNKGKVSEAKKVSSQLAALNPNLAQGSA
LTGLAHLAEDNQQLAEQSFLKAAAQSPDCAEYFFLLGRLYWTMGEETRKDRSKAQSHFLK
AAKLDPHLGCAFRYLGHYYREVANDSGRARGCYRKAFDLDEDDTESGAAAVDLSMAQEDM
DTALAMLQSVIEKATPGSAKWAWMRRGLYYLKGGQHQLAIADLQAALRADPEDWVCWECL
GEAYLNRQSFTAALKAFGKAHLLQPTSIYSVYQVAAIKQTLGKFQEAVAEYLHITTQHDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDMIEQAIQNLFRAAKLRSDLSCLWKLLGDACT
AVNTVSLKRARVQMPAELSGSDPQAEVHTLNQAQTLRVGERCYTRALKLMPEVASLWYDL
GLNFYHQARLSCDAEEEQSSLLEKAQQCLRKAIMMESGNHNYWNALGVINTSKGVENLAL
SQHCFIKSIQVEANNVVAWTNLGTLYLKKDNIELAHEAFKVAQSLEPMYVNCWIGQALIA
ERVGSYDTMDLFRHTTELSTHTEGVKGYAHWVCSTLLDKSNRDSELYRYNIIQMNAISAA
QVALSKYTERIQSDADAFIMLGFLAEHLQLKRQAVQAYHRAVELLQSTSLTEQLSFARSN
YARALCACGQWQEAVHVFKSTPLEELSDLSGLALAYCKAGLIPESISTYERALAVASSEK
QTAYVLTALALLQHQQSNIDSAKALLFKCSMLKEPVPESLLCLCALGLVHNDTTLAAAAR
TELLKQGSSCASVIEQRCLLTCTLLALQGDYSAVQREASRAVHSYPGNASLWSLLSKLVP
KYYPRKANGGAMAGHVACLSSMTQGKRALLYSGINQLACGRHSGEDAHRNALKTMQRAVL
LCPDDPAAWAGLMAACHTENTCCYLSGSDVRRQGLEQTLMSVVSEKVRCMEEVERPLAQS
LETWVLQQAVSGLMLSGQLEQAEALCSQVLKVSPEHPAVILSLTQVQCQRLLQASGGTLL
SESALAQLNSAVMLNPNNIAAWHWLAGVYISQGLLVQAVVALKQSLQLASQLGLHSSQVA
SLLRLGLLALRPTMADVPGNDWKDLVLQATTEALKLSSSPAALLFQALLQFVTKMAARET
RRLLEKLVYGPVQEFSATVPQVASWYLLRHLHFKNDDQLINVLLERAKMNGDHRLLDFHS
QLISLS
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaaagaagtgaaagccgccctaaagagtgctaaggaggctataaaaagcaag
gagttcaaagaggcgttgaaacattgcaagactgttttgaagcttgaaaaaaacaactac
aatgcctgggtgttcatcggcctggctgccagtgagctggatcaacctgatcaggcacag
acggcctacaagaaggctgtggagctggagccggagcagcttttggcatggcagggcttg
agcaatttatacgagaagacggatcagtgggatttcaaaattgagctacctaatgtctat
cagaagctcgtcgacctgtatgcaagctcagacaaaaacaagtgttacgagatgatcgga
aagctacaagaaatacatcagtctgacaaagagtattccaagttagcaaaggtttggctg
caattgattcaactcaaagaggatgacggcgcagacaagcaatctttactccagctatgg
caacagatggcccagctcctgtcaaactgtctcgctgacaatgagcaggacggcgaaatt
cggaagcatttaagcacagctttggagaaggccttacttgtggttgagccgacgcctgga
gaagaacaccgtaagctctcggtggacttcatcaaatgtctctccaagctgcctgaagaa
gaggagaaaatgaaacacgcgtgcgagtcaatgctgtctctctacccagctcaaagttat
cctcttgaagttctttgttcccactacctcgaaaaaggtgtctcgagcgaggaggcggac
agctgcttttcgcgacttcgtgatttggcgccgggtaacgcttggtgtgatttgggattt
ggcatgaaagctctgcaagagggcaggtataaagacgccattaaagaccttgcgcaagga
ttaaagaaaaggaattttaacccagcgtggtgcagtttggcggaggctcaactcaaagta
cacaaatactcagactgctctaaatcgtgcgcccaaggtttgacagcgtgtgtgcccgga
gacaaggaactgaagatccgattgctgaagctaaggcttgaagctttggtcaggagtgga
gaggagaaggctgcagagcaagccttggagatgttttccctggttcctgatgctgacaaa
gatccatcactagttgctcttaagggtcgtgcataccttaacaaaggaaaagtatcggag
gcaaaaaaggtgtcatcacagctggcagccttgaaccccaacctggctcagggatcagcg
ctgacgggactggcccacttagctgaggacaaccagcagcttgcagaacaaagtttcctc
aaggcagcggcacaaagccccgactgcgccgagtattttttcttgctgggccgactctac
tggaccatgggagaagagacccgaaaagacagaagcaaagcgcagtcacattttctcaag
gctgcaaagttagacccgcacctcggttgcgcgttccgctaccttggccattattatcgg
gaggtggccaacgactccggccgggcacgcggctgttataggaaggcctttgacttggac
gaagatgatacggaatctggcgcggctgcagttgatctcagcatggcgcaagaagatatg
gacaccgccttggcaatgctccagtcagtcatcgagaaggccactccaggttctgctaaa
tgggcctggatgaggcgaggcctttattacttaaaaggtggccagcatcaactggccatt
gccgatctccaagcggctctgagagccgatccggaggactgggtgtgttgggagtgtttg
ggtgaggcctacctaaaccgccagagtttcacggcagcgctgaaggccttcgggaaggcc
catcttcttcagcctacctccatctacagcgtctaccaggtagccgccatcaagcagacc
ctaggcaagttccaagaggctgtggcggagtatttgcacattacaacccagcacgactac
gtcccggctcttaaaggtctcggtgaatgccaactgtccctggcaaaaagtttaatggag
gactgcagagatggtggagccattgacatgattgagcaagccatacaaaaccttttcaga
gctgctaagctacgatctgacttgtcctgcttgtggaagctgctgggagatgcctgcacg
gctgtcaacacagtgtccctcaagagggctcgggttcagatgccggcagagctttctggc
tccgatccacaagctgaggtccacacgctgaatcaggcccagacacttagagtcggcgaa
aggtgttacactcgtgccttgaagctcatgccagaggttgccagtctgtggtatgatctg
ggccttaatttttatcatcaggctcgcctgagctgtgatgcagaggaggagcaatcgtca
ctactagagaaagcacaacaatgtttacggaaggcaattatgatggagagcggcaaccat
aactactggaacgctttgggagtgatcaacacaagcaaaggtgtggagaatttggccttg
tcccagcattgcttcatcaagtccattcaagtggaagcaaacaatgtcgttgcctggacc
aaccttggcaccttgtatctgaaaaaggacaatatcgagctcgcacatgaggccttcaag
gttgcgcaatcattggagccgatgtatgtcaactgctggattggacaggccctgatcgca
gaaagagtgggaagctacgacaccatggatcttttccgacacaccaccgagcttagcaca
cacacggagggggtgaaaggttacgcccactgggtgtgttctaccttattggataaaagc
aatagagactctgaactgtaccgctacaatatcatccagatgaacgccatctctgcggcc
caggtggcactcagcaagtacaccgaaagaatccagtcggatgcagatgctttcatcatg
ctgggcttcctggccgaacatctgcagctgaagagacaagccgtccaagcttatcacaga
gctgttgagctgcttcagtccacgtccctcacagagcaactctcatttgctcggagcaac
tacgctcgtgctttgtgtgcttgtggccagtggcaggaggcagtccatgtttttaagtcc
actccgctggaggagctcagtgatctgtcagggctggctctggcctattgcaaggcagga
ctcataccagagagcatcagcacatacgagcgcgccctggctgtggcctccagtgaaaag
cagaccgcgtacgtcttgacagctctcgccttgctgcagcaccagcaaagcaatatagac
tcggctaaggccttgctgttcaaatgctccatgttgaaggaaccagtaccagagtcccta
ctatgtttatgtgccctcggattggtccacaacgatacaacgctagccgccgccgcccga
accgagctgctcaagcaaggctcgtcctgtgcaagtgttatcgagcaacgctgtcttctc
acctgcactttactggcgctgcagggcgactacagtgcggtgcaacgagaggcctccaga
gctgtgcacagctatccagggaatgcatcgttgtggtcgcttttgtccaaactggtaccc
aaatattaccccaggaaagcaaatggtggagcgatggccggacacgttgcttgtctctcc
agtatgacccagggaaagagagcactgctgtacagcggcatcaaccagttggcctgtgga
agacactctggagaggatgctcacaggaacgctctgaagaccatgcagagagccgtgctg
ctctgtcctgatgatccagcggcatgggcaggattaatggctgcctgtcacacagaaaac
acttgctgttatctctctggctcagatgtacgtaggcaaggactagagcaaaccctcatg
tcggtggtttctgaaaaagtgcgttgcatggaggaggtagagcgccccctagcccagtct
ctggaaacatgggtactacaacaggcagtgagtggtctcatgctgagcggacaacttgag
caagcagaagcactctgctcacaggtgctcaaagtgtctccagaacatcccgcagtgatc
ttatccctgacacaagtccagtgccagcgcctccttcaggccagcggtggtactttgctt
tcagaatccgccttggcccagctcaacagtgctgtgatgttgaaccccaacaatattgcg
gcgtggcattggttggccggcgtgtacattagccagggtctgctcgtgcaggcagtcgtg
gctctcaaacagagtttgcagctcgcctcccaactcggcctgcacagcagtcaagtcgcc
agcctgctgcgtctcggcctactcgccctgaggccaactatggcagatgtccccggaaac
gactggaaagatctggtcctacaagctacgacagaagccttgaagctgagctcctcccct
gcggctctcctcttccaagcgttgcttcagtttgttaccaagatggctgccagggaaacc
cggcgactgttggaaaagctggtctacggacccgttcaagaattctctgcgactgtgccg
caagtagccagctggtacctgctcagacacctgcatttcaaaaacgacgaccaactaatt
aatgtacttttggagcgcgccaaaatgaacggggatcatcgattgctggactttcattca
cagcttatttctttgtcttga
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integrated database retrieval system
