Sphingomonas sediminicola: H9L14_02695
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Entry
H9L14_02695 CDS
T07077
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssed
Sphingomonas sediminicola
Pathway
ssed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L14_02695 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssed03021
]
H9L14_02695 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssed03400
]
H9L14_02695 (rpoB)
Enzymes [BR:
ssed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L14_02695 (rpoB)
Transcription machinery [BR:
ssed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L14_02695 (rpoB)
DNA repair and recombination proteins [BR:
ssed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L14_02695 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QNP46177
UniProt:
A0ABX6T8I5
LinkDB
All DBs
Position
complement(488926..493095)
Genome browser
AA seq
1389 aa
AA seq
DB search
MATKAIDAPRKTTSGLKTNSRRIRKIFGNVHEISEMPNLIEVQRESYEQFLRSDPAIGYV
SGLEKTLRSVFPIEDFAGTAHLDFDRYELEPPKYDTDECRQRGLTYAAPMRVTLRLTTFE
IDPETETKSVIDIKEQDVYMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKT
HASGKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLLALQLGPEEILNLF
YNTVSYVRGKNGWQIPYVADAWRGQKPLHDLANAETGEIVFKANEKITPRRANQVAKDGM
KALVVPTEEIFGRYSAHDLINEKTGEIYIEAGDEVTAENLEKLDKAGVKTLELLDIDYVN
TGPWIRNTLKADKNEDADSALSDIYRVMRPGEPPTRETADALFYGLFFDSERYDLSAVGR
VKLNMRLGLDVEDTVTTLRREDILAVVKELVNLKDGKGEIDDIDNLANRRVRSVGELLEN
QYRIGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLS
EVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVN
KYGFIETPYRKVVDGKVTKDVVYLSAMEEAKHTIAQANAELNKDNTFAEEIISSRRNGDF
LIAPREQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQADAPLVGT
GMEETVARDSGAAIAARRSGIVDQVDATRIVVRATGDLRAGESGVDIYTLMKFQRSNQNT
CINQRPLVKVGDTVEAGEIIADGPSTQFGELALGRNVLVAFMPWNGYNYEDSILISERIV
KDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDIL
VGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTIVEVRVFNRHGIDIDD
RTRAIQAEEKDRLRKDADDERGILNRATFARLKEMLLGQVATAAPKSIKKGATLDEDMLE
ATDKHDWWKIAVKDDKRQADIEALKGQYDEAANVITRRFEDRVEKLERGDELPPGVLKMV
KVFVAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHADIVLNPLGVPSRMNVG
QIFETHLGWASRGLGRQIEEMLDSMHERGKDIADKDVKALRAKLKDIYGDAYTKDIDARD
DAAIIELASNLVGGIPMGTPVFDGARESDVSAMLEKAGLSTSGQVTLYDGRTGDPFDRQV
TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY
TLQEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELDSVASE
DEPPAIAAE
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagcgatcgacgcacctcgtaagacgacgagcgggctcaagaccaactcg
cggcgcatccgcaagattttcggcaacgtccacgaaatctcggaaatgcccaacctcatc
gaggttcagcgcgagagctacgagcagttcctccggtcagacccggccatcggctatgtc
tcaggccttgaaaagacgcttcgttcggttttcccgatcgaggatttcgccggcaccgcg
cacctcgacttcgaccgctacgagctggaaccgccgaagtacgacaccgacgagtgccgc
cagcgcggtctcacctatgccgcgccgatgcgggtcacacttcgcctgactacgttcgag
attgatccggagaccgagaccaagtcggtcatcgatatcaaggagcaggacgtttacatg
ggcgatatgccgctcatgacgcagaacggcaccttcatcgtcaatggcaccgagcgcgtc
atcgtcagccagatgcaccgttcgccgggcgtcctgttcgaccacgaccgcggcaagacc
cacgcctcgggcaagttcctcttcgccgcccgcgtcattccctatcgcggcagctggctc
gatttcgagttcgacgcgaaggacatcgtcaacgtccgtatcgaccgcaagcgcaagctg
ccggtcacgaccctgctgctggcgctgcagctcgggccggaggaaatcctcaatctgttc
tacaacacggtcagctacgtccgtggcaagaacggctggcagatcccgtatgtcgccgac
gcatggcgaggccagaagccgctgcacgacctggccaacgccgagaccggcgagatcgtg
ttcaaggccaacgagaagatcaccccgcgccgcgccaaccaggtggccaaggatggcatg
aaggcgctcgtcgttccgaccgaggaaatcttcggccgctattcggcgcatgacctcatc
aacgagaagaccggcgagatttacatcgaggccggagacgaggttactgccgaaaacctc
gagaagctcgacaaggcgggcgtgaagacgctcgaactgctcgacatcgattacgtgaac
acgggtccgtggatccgcaacacgctcaaggccgacaagaacgaggacgcggattcggct
ctttccgacatctaccgcgtcatgcgccccggcgagccgccgacccgcgagaccgcggac
gcgctgttctacggcctgttcttcgattccgagcgctacgacctttccgcggtcggccgc
gtcaagctcaacatgcgcctcggcctcgacgtcgaggacacggtcaccacccttcgtcgc
gaggacatccttgcggtggtcaaggagctggtgaacctcaaggacggcaagggcgagatc
gacgatatcgacaatctcgcgaaccgccgcgtccgttcggtcggtgagctgctggagaac
cagtaccgcatcggccttctccgcatggagcgcgccgttaaggagcgcatgagctcggtc
gacgtgtcgacggtcatgccgaacgacctcatcaacgcgaagccggcggttgccgcggtc
cgcgagttcttcggctcctcgcagctctcgcagttcatggaccagaccaacccgctgtcc
gaagtgacgcacaagcgtcgcgtttcggcgctcgggcccggcggtctcacccgcgagcgc
gcgggcttcgaggtccgcgacgtccacccgacgcactacggccgcatctgcccgatcgag
acgccggaaggtccgaacatcggcctcatcaactcgctcgccagcttcagccgcgtgaat
aaatacgggttcatcgagacgccgtaccgcaaggtcgtcgacggcaaggtgacgaaggac
gtcgtctacctctccgcaatggaagaggcgaagcacacgatcgcgcaggcgaacgccgag
ctgaacaaggacaacacctttgccgaggaaatcatctcctcacggcgcaacggcgatttc
ctgattgctccgcgcgagcagatcacgctgatggacgtgtcgccgaagcagcttgtgtcc
gtcgcggcctccctcatcccgttcctcgagaacgatgacgcgaaccgcgctctcatgggc
tcgaacatgcagcgtcaggctgtgcccctgcttcaggcggacgcaccgcttgtcggcacc
ggcatggaagagactgtcgcccgcgattcaggcgccgccattgccgcccgccgttccggt
atcgtcgaccaggtcgacgcgacccgtatcgtcgtgcgcgccaccggcgacctccgcgcg
ggtgaatcgggcgtcgacatctacacgctgatgaagttccagcgctcgaaccagaacacc
tgcatcaaccagcgtccgctggtgaaggttggcgacacggtcgaggccggcgagatcatc
gccgacggtccttcgacgcagttcggcgagctcgcgctcggccggaacgtgctcgtcgcg
ttcatgccgtggaacgggtacaactacgaggactcgatcctgatctccgagcggatcgtg
aaggacgacgtcttcacctcgatccacatcgaagagttcgaggtcatggcccgcgacacc
aagctcgggccggaagacatcacccgcgacatcccgaacgtcggcgaggaagctcttcgc
aacctcgatgaggcgggcatcgtatacattggcgcagaggtcgagcctggcgacatcctg
gtcggcaagatcacgccgaagggcgaaagcccgatgacgccggaggaaaagctcctccgc
gccatcttcggcgaaaaggcttcggacgtccgcgacacctcgctgcggctgccgccgggc
gtgtcgggcacgatcgtcgaggtccgcgtcttcaaccgtcacggcatcgacatcgatgac
cgtactcgcgccatccaggccgaggaaaaggaccggttgaggaaggacgccgacgacgag
cgcggcatcctcaaccgggcgaccttcgcccgtctgaaggaaatgcttctcggccaggtc
gcgaccgcagctccgaaaagcatcaagaagggcgcgacgctcgacgaggacatgctcgag
gcgacggataagcacgactggtggaagatcgccgtcaaggacgacaagcgccaggccgac
atcgaagccctcaagggccagtacgacgaggcggccaacgtcatcacccgccgcttcgaa
gaccgtgtcgagaagctggagcgtggcgacgagctgccgccgggtgtgctgaagatggtc
aaggtcttcgttgccgtgaagcgcaagcttcagccgggcgacaagatggccggccgtcac
ggcaacaagggcgtcatcagccgcatcctgccgatcgaggacatgccgttcctcgaagac
gggacgcatgctgacatcgtgctcaacccgctgggcgtgccgtcgcgtatgaacgtcggt
cagatcttcgaaacgcaccttggctgggcttcgcgcggtctcgggcgccagatcgaagag
atgctcgacagcatgcacgagcgcggcaaggacattgccgacaaggacgtgaaggctctc
cgcgcgaagctgaaggacatctacggcgatgcctatacgaaggacatcgacgcgcgcgac
gacgcagcaatcatcgaattggcgtcgaacctggtaggcggcattccgatgggcacccct
gtgttcgacggtgctcgcgagagcgacgtttcggccatgctggagaaggcaggtctaagc
acgtcgggtcaggtgaccttgtacgacggccgcaccggcgatcctttcgaccgtcaggtg
accgtgggctacatctacatgctgaagctccaccacctcgtggacgacaagatccacgcg
cggtcaatcggcccctacagcctcgtcacccagcagccgctgggcggtaaggcgcagttc
ggcggacagcgcttcggtgaaatggaagtgtgggcgctgcaggcttacggcgctgcctac
acccttcaggagatgctgacggtgaagtcggacgacgtgatcggccgcaccaaggtctac
gaggcgatcgtcaagggcgacgacaccttcgaggccggcattccggagagcttcaacgtt
ctcgtaaaggaaatgcgcagccttggcctgaacgtcgagctggactcggtcgcctccgag
gatgagccgccggcaatcgcggccgaataa
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integrated database retrieval system
