Solea senegalensis (Senegalese sole): 122771479
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Entry
122771479 CDS
T07721
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03030
DNA replication
ssen03410
Base excision repair
ssen03420
Nucleotide excision repair
ssen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122771479 (rfc1)
03410 Base excision repair
122771479 (rfc1)
03420 Nucleotide excision repair
122771479 (rfc1)
03430 Mismatch repair
122771479 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssen03032
]
122771479 (rfc1)
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122771479 (rfc1)
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122771479 (rfc1)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122771479 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
Rad17
RuvB_N
AAA_17
BRCT_2
AAA_14
AAA_16
AAA_30
AAA_7
AAA_18
nSTAND3
AAA_33
RNA_helicase
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
122771479
NCBI-ProteinID:
XP_043885008
LinkDB
All DBs
Position
LG6:14419096..14431110
Genome browser
AA seq
1178 aa
AA seq
DB search
MDIRRFFAPAAAKPAVQRPQNGNLKVEDKKKRDKSMSPDEEVKQKKKDNSKVKGSKMEEK
HHDGEKKRKKRAIIESDSEEEQVRKSKKSPKEKQKTRKAVPPPKEDPVQYVSETDSDSDN
FLSLKKVSKTKQDTAFKQRKSGPKKEVKTPVKLSSTQGKSGLKSPPVAAASKLVQPPQPK
QTPTSVFDYFGSGNIQRSDKKLVASTKRKAPTEDMHDLISDEEIARQLQMEDDMELEKQV
HQDMEFAKTLAMLDKEPQAKKARTGSGEKQALAANPKKSSSDSAAGSTSSTSSTSKSRRN
MSEDVISPSPKKKVSPIKASSKLAMMKKMDEEKNIGPNVKAHISPTKIKTSPRMEPLASS
SSEMKFTPKMATSPTSLKTSPKKPESTSTSPDDAEKKKVNSTAFRNYLNRDGPRALGSKE
IPQGAENCLEGCVFVVTGVLESMERDDAKSLIERYGGKVTGNISKKTTYLVQGRDSGVSK
LEKAESLGTKILDEDGLLDLIRTKPGKKSKYEIAAEAESKTSKTRSTPTQKSKVTPTAQK
ISPSKGNSRSPHTPSPSKTGLTQGYSSKSGGGVTPPGRGSGQTARRELGLSSTRLPSASD
SPSTAGEDPSLLWVDKYRPHSLKTVIGQQGEQSCANKLLRWLQNWYKNNSGSASKAPARF
GKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAE
SLNNTSIEGFYKGMSQTVSNKHILIMDEVDGMAGNEDRGGIQEMIGLIRTSKIPIICMCN
DRNHPKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGIKIPPPALNEMILASNQDVRQ
VIHNLSMWSAKDKVMTYDQCKSDAANARKDMKLGPFDVCRKVFALGEETAHMSFIDKSDL
FFHDYSLAPLFVQENYPHVRPAAAGGDLKSHLVLLSKTADSISDGDLVDRRIRSAQNWSL
LPTQAVYASVLPGELMRGYMSQFPTFPSWLGKNSSTNKHSRIVQELASHMSLKTLSSRQA
VNLDYLHYLRQALLSPLQKRGAEGAGEAVQLLDDYQLIREDVDNIMEISVWGGKPDPYSK
LDPKVKAAFTRTYNKEVHLTPYSLQIVKKGRRGGGEGESELGGEGMDNEPQEPEGEEEGL
KTDAMIKQKKAKATKETKKEKKEDSGKGKGKGKGKAKK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccggctgcagccaaacctgcggtgcagagaccccag
aatggaaacctaaaagtggaggacaagaagaagagggacaagtctatgtctccagatgag
gaggtgaaacagaaaaagaaagacaactcaaaggtcaaaggctccaaaatggaggagaaa
caccatgatggtgagaaaaaaaggaagaagcgtgccatcatagagtcagactcggaggag
gagcaagtgaggaagtcaaagaaatcgcccaaagagaagcagaagaccagaaaggcggtg
ccacctcccaaagaagatcctgtgcagtacgtctctgaaacagactcggacagtgacaac
tttctatccttgaagaaagtttccaaaaccaagcaggacacggcgttcaaacaaagaaag
tcagggcccaaaaaggaagtgaagactcctgtgaagttgtcgtctacacaggggaaatct
ggactcaaatctcctccagtggccgcagcctcaaagctagtccagccacctcagcccaaa
caaacccccacatcagtatttgactactttggcagcgggaatattcagcgctcagacaag
aagctggtagccagcactaaaagaaaagctccaactgaggacatgcatgatctgatcagt
gacgaggaaattgccagacagctgcagatggaggacgacatggaactggaaaaacaggtc
catcaggacatggaatttgcaaaaactctagccatgctggacaaggagccacaggccaag
aaagctcgtacaggctcaggtgaaaaacaagcacttgctgcaaatcctaaaaagagcagc
tcagactccgctgctggcagcacaagcagcacaagcagcacttcgaagagccggcggaac
atgtcagaggatgtcatcagcccgtctccaaagaagaaagtttccccaatcaaagcaagc
tccaaactggctatgatgaagaaaatggatgaagagaagaacattgggccaaacgtcaaa
gcccacatttcacccacaaaaattaaaacctcacccagaatggagccacttgcttcatcg
agctcagaaatgaagtttacacccaaaatggcaacatcacccacttcacttaaaacatct
cccaagaaaccagagagcacaagcacaagccctgacgacgctgagaagaagaaagtaaac
tctacagcattcaggaactacctcaacagagatggaccacgtgctctgggctccaaagaa
atcccacagggagcagagaactgtttggagggctgtgtgtttgtggtgacgggggtcctg
gagtccatggagagagatgatgccaagtcactcatcgagcgctacggaggcaaagtgact
ggcaatatcagcaaaaagacgacctacctggtgcagggcagggacagtggagtctcaaag
cttgagaaggctgaaagtttgggtacaaagatcctggatgaggatggtctgctggatctg
atcagaaccaaacctgggaagaagtccaagtatgagattgctgcggaggcagagagcaaa
acctcaaaaacgaggtctacccccactcagaagtcaaaggtcacccccacagcccagaag
atctctccttccaaaggtaattccaggtctcctcacaccccgagcccatcaaagactggt
ctgacacaaggttacagtagcaagagtggaggtggtgtcactccacctgggagaggctca
ggtcagacggctcggagggagctgggtctgtcctccactcgtttgccttcagcttcagac
tctccatcaacggccggagaggatcccagtctgctctgggtggacaagtatcgcccacac
tctctgaagacggtgattggccagcagggggagcagagctgtgccaataagctgctgcgg
tggctgcagaactggtacaagaacaacagtggctctgcctccaaagcaccagcaaggttt
ggtaagtttggagggaaagatgatggatcaggattcaaagctgctctgctctctggacct
ccgggtgtggggaagactaccactgcagccctggtctgtgaggagctgggtttcagctac
gtggagatgaatgctagctgtactcgcagtaaaaacagtctgaaggaagttgtcgcagag
tcacttaacaacaccagcattgagggcttctacaaaggaatgtctcagacggtgagcaat
aaacacattctgatcatggatgaggttgatggcatggctggcaatgaggaccgtggagga
atccaggaaatgatcggcctgatcaggacttcaaaaattcctatcatctgcatgtgcaac
gatcgtaaccatccgaagatcagatcactggccaactactgctatgatctgcgtttccag
aggccgcgagtggaacagatcaagggagccatgatgtccattgctttcaaagaaggaatc
aaaatcccgcccccagctcttaacgaaatgatccttgcttccaatcaggatgttagacag
gtgatccacaacctgagcatgtggtcggctaaagacaaggtgatgacgtacgaccagtgc
aagtctgacgcagccaatgcccgcaaggacatgaaactggggccatttgacgtttgcagg
aaggtgtttgccttgggggaggagactgcgcacatgagcttcattgacaagtccgacctc
ttcttccacgactactcattagcgccactctttgtccaggagaactaccctcatgttcgt
ccagcagctgctggtggagatctgaagtcccacctggtgttgctcagcaagacagcggac
tccatctctgacggagacctggtggacagacgtatccgctctgcacagaactggtcactg
ttgcccacccaggccgtatatgccagtgtgttaccaggtgagctcatgagaggctacatg
agtcagttcccaacatttcccagctggctgggcaaaaactcctccaccaacaaacattcc
cgaatcgttcaggagctggcttcacatatgagcttaaagacgttaagcagcagacaggca
gtgaacctggactacctgcactacctgcgtcaggcactgctgagcccacttcagaagcgt
ggagcagagggtgctggagaagctgtgcagctgctggacgactaccagcttatcagagag
gacgtggacaacatcatggagatcagtgtctggggtggaaaacctgatccctactccaaa
ctggaccccaaggtaaaggcagctttcacacgcacgtacaacaaagaagtccacctgacg
ccatactccctacaaatcgtgaagaagggacgccgtggtggaggtgaaggagagtcagag
ctgggaggagagggcatggacaacgaacctcaggagcctgagggtgaagaagaaggcctg
aaaacagatgctatgattaaacagaagaaggcaaaggccaccaaggagacgaagaaggag
aagaaagaagattctgggaagggcaaaggaaaggggaaaggcaaggctaagaaatga
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integrated database retrieval system
