KEGG   Saccharolobus shibatae: J5U23_00068
Entry
J5U23_00068       CDS       T07357                                 
Name
(GenBank) DNA ligase (ATP, ADP or GTP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sshi  Saccharolobus shibatae
Pathway
sshi03030  DNA replication
sshi03410  Base excision repair
sshi03420  Nucleotide excision repair
sshi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sshi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J5U23_00068
   03410 Base excision repair
    J5U23_00068
   03420 Nucleotide excision repair
    J5U23_00068
   03430 Mismatch repair
    J5U23_00068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sshi03032]
    J5U23_00068
   03400 DNA repair and recombination proteins [BR:sshi03400]
    J5U23_00068
Enzymes [BR:sshi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J5U23_00068
    6.5.1.6  DNA ligase (ATP or NAD+)
     J5U23_00068
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     J5U23_00068
DNA replication proteins [BR:sshi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    J5U23_00068
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     J5U23_00068
DNA repair and recombination proteins [BR:sshi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     J5U23_00068
   NER (nucleotide excision repair)
    Other NER factors
     J5U23_00068
   MMR (mismatch excision repair)
    Other MMR factors
     J5U23_00068
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QXJ27210
UniProt: Q9P9K9
LinkDB
Position
58641..60446
AA seq 601 aa
MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKAIIDKVVYIIQGKLWPDFLGYPELG
IGEKFLIKAISIATNTDENSVENLYKSTGDLGEVARRLKSKQQSTGILGFLGTSSKESLT
VDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVL
DAMAIAFGGGQSASEIVERAYNLRADLGNIAKIIVEKGIEALKTLKPEVGIPIRPMLAER
LSNPEEILKKVGGSALVDYKYDGERAQIHKKSDKIFIFSRRLENITSQYPDVVEYISKYV
EGKEFIIEGEIVAVDPESGEMRAFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDY
TTKPLEVRRKLLESIVKPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDA
IYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFE
SVCKVASGFSDEQLDELQKKLMEIKRDIKHPRVNSKMEPDIWIEPVYVAEIIGAEITISP
LHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPLVDES
V
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggagtttaaagttattgccgaatactttgataaattagagaagatatcttcaaggctc
cagcttacagctttactggctgatcttttaagcaaaagcgataaggcaattatagataag
gtagtttatattatacaaggcaaattatggcccgattttctaggttatccagagcttgga
attggagagaaattcttaataaaagcaattagtatagctacgaacacagatgaaaattca
gtagaaaatctctataagtcaacaggtgatcttggagaagtagctcgaaggttgaaaagt
aagcagcaaagtacaggaattttaggttttttgggtacttcaagtaaagagagcttaaca
gtggatgaagtttactctacgttatctaaggtggcattaactacgggagagggtagtaga
gatttaaagataagattactggcaggattgttaaaaaaggcagatccgttagaggccaag
ttcctagttagatttgttgaaggtcgacttagagttggtataggagatgcgacagtttta
gatgctatggcaatagcttttggcggggggcaatcagcatcagaaatagttgaaagagct
tataatcttagggcggatctaggaaacattgcaaaaattatagtagagaagggaattgaa
gccttaaagactctaaaacctgaagttggaataccaattagaccgatgctagctgaaagg
ttatcaaaccctgaagaaatattaaagaaagtaggtggaagtgcactagtcgattataaa
tacgatggagagagggcccaaatacacaaaaaaagtgacaaaatttttatattttcgcga
agattagagaacattacttctcagtatccagatgtagtagagtatattagtaaatacgtt
gaaggcaaagagttcattatagaaggagaaatagtggctgtagatccagaaagcggtgag
atgagagcatttcaggagttaatgcacagaaagaggaagtcagatatttacgaagcaatt
aaagagtacccagtaaacgtatttctctttgatttaatgtattatgaagatgtggattat
actacaaagccattagaagttaggagaaaattgttagaaagtattgtaaaaccaaacgac
tatgtaaaaatagctcatcatattcaagttaataatgtagaggatcttaaatcgttcttc
tatcgagcaatatctgagggtggagagggagtaatggtgaaggcaattggaaaagatgca
atatatcaagccggtgctaggggttggttatggataaagcttaaacgtgattatcaaagc
gagatggctgatacagtagacttagtagttgttggtggtttctatgggaagggtaaaaga
ggcggcaagataagctcactattaatggccgcatacaatcctaagactgatactttcgaa
tctgtttgcaaggtggctagtggcttctcagatgagcaacttgatgagttacagaagaag
ttaatggaaataaagagggatataaaacatcctagagttaattctaagatggaaccagat
atatggatagagccagtttatgtagcggaaataattggagcggagataacaatatctcct
ttacatacttgttgtcaagacgtcgtagagaaggatgctggtttatctataagatttcct
cgatttataagatggagagacgataaaagtccagaagatgctacaaccactgatgagata
cttgaaatgtacaacaagcagcctaagaagaagatcgaatcaccacttgtagacgagagc
gtttaa

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