Staphylococcus simiae: SAMEA4384339_0487
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Entry
SAMEA4384339_0487 CDS
T06955
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssim
Staphylococcus simiae
Pathway
ssim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4384339_0487 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssim03021
]
SAMEA4384339_0487 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssim03400
]
SAMEA4384339_0487 (rpoB)
Enzymes [BR:
ssim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4384339_0487 (rpoB)
Transcription machinery [BR:
ssim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4384339_0487 (rpoB)
DNA repair and recombination proteins [BR:
ssim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4384339_0487 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
ATP-grasp_6
Motif
Other DBs
NCBI-ProteinID:
SNV61991
LinkDB
All DBs
Position
1:546663..550214
Genome browser
AA seq
1183 aa
AA seq
DB search
MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYEWFLNEGLIEMFRDISPIEDFTG
NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYFNEKLDKNGRENYDATIIPNRGAWLEFETDAKDVV
YVRIDRTRKLPLTVLLRALGFSSDQEIVDLLGDNEYLRNTLEKDSTENTEQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNKKLHLKHRLFNQKLAEPIVDSETG
EIVVEAGTVLDRRKLDEIMDVLESNANSEVFELHGSVIDEPVEIQSIKVYVPNDEEGRTT
TVIGNAFPDSEVKCITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTDSVTPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDIDTHAITDQIDYLTADEEDSYVVAQANSKLDENGRFIEDEVVCRFRGNNT
VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTG
MEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSG
TCYNQRPIVAVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGTPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGL
DVKVMDEQDNEIEMADVDDEDVVERKVDLQQKDAPESQKEVTD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtcaagttgtccaatatggaagacatcgtaaacgtagaaactacgctagaatt
tcagaagtattagaattaccaaacttaatagaaattcaaacaaaatcttacgaatggttc
cttaacgaaggtttaattgaaatgtttagagacatttctccgatagaagattttactggt
aatttatcattagaatttgttgattaccgtttaggtgaaccaaaatatgacttagaagaa
tctaaaaaccgtgacgcaacatatgcagcacctcttcgtgttaaagttcgtctaatcatt
aaagaaactggtgaagttaaagagcaagaagtatttatgggtgatttcccattaatgact
gatactggtacgttcgttattaatggtgctgaacgtgtaatcgtatcacaattagtacgt
tcaccatccgtttactttaatgaaaaattagataaaaatggtcgagaaaactatgacgct
acaatcattccaaaccgtggtgcatggttagagtttgaaactgatgcaaaagacgttgtt
tacgtgcgtattgatagaacacgtaaattaccattaactgtattattacgtgctttaggt
ttctcaagcgaccaagaaattgttgacttattaggagacaatgaatatttacgtaatacg
cttgaaaaagatagtacggagaacactgaacaagcattattagaaatctatgaacgcttg
cgtccaggtgaaccaccaactgttgaaaatgctaagagtttactatactcacgtttcttc
gatccaaaacgttatgatttagcgagtgtgggtcgatacaaaacaaacaaaaaattacat
ttaaaacatcgtttgttcaatcaaaaacttgctgaaccaatcgttgatagcgaaactggg
gaaattgtagttgaagcaggaactgtacttgatcgtcgtaaattagatgaaatcatggac
gttttagaatcaaatgcaaatagtgaagtgtttgaattacacggtagtgttatagatgaa
cctgttgaaattcaatcaattaaagtatatgtaccaaatgatgaagaaggacgtactact
actgtaattggtaatgctttcccagattcagaagttaaatgtattacaccagctgatatt
attgcttcaatgagttatttctttaacttattaagtggtattggttatacagatgatatt
gaccatttaggtaatcgtcgtttacgttctgtaggcgaattattacaaaaccaattcaga
attggtttatctagaatggaaagagttgtacgtgaaagaatgtctattcaagacactgat
tctgtcacaccacaacaattaatcaatattcgtccagtaattgcatctattaaagaattc
tttggtagctctcaattatctcaattcatggaccaagctaatccattagctgaattaaca
cataaacgtcgtttatcagcattaggacctggtggtttaactcgtgaacgtgctcaaatg
gaagtacgtgacgttcactattctcactatggccgtatgtgtccaattgaaacacctgag
ggaccaaatatcggattaattaactcattatcaagctatgctcgagttaacgaattcgga
tttattgaaacaccttatcgtaaagtagacatagatacgcatgctattactgatcaaatt
gactatttaacagctgatgaagaagatagttatgttgttgcccaagccaactctaaatta
gatgaaaatggtcgttttatcgaggacgaagttgtttgtcgtttccgtggtaataacaca
gttatggccaaagaaaaaatggactacatggatgtatctcctaaacaagttgtttctgca
gcaacagcatgtatcccattcttagaaaacgatgactcaaaccgtgcgttaatgggtgca
aacatgcaacgacaagcagtaccattgatgaacccagaagcaccatttgttggtacaggt
atggaacacgtagcagcacgtgactctggtgcggcgattacagctaaacatagaggacgt
gtagaacatgttgaatctaatgaaatcttagttagacgcttagttgaagaaaatggtgtt
gaacacgaaggtgaattagatcgttatccattagctaaattcaaacgttcaaactcaggt
acttgttacaatcaacgtccaatcgttgctgttggagatgtagttgaatacaacgagatt
ttagctgacggtccttctatggaattaggagaaatggcacttggtagaaacgtcgttgtt
ggtttcatgacatgggacggttataactacgaagatgctgttatcatgagcgaaagatta
gtaaaagatgatgtatatacgtcaattcatattgaagagtatgaatcagaagcgcgtgat
actaaacttggacctgaagaaattactcgtgatattccaaacgtttctgaaagtgcactt
aaaaacttagatgatcgtggtattgtttatgtgggtgctgaagttaaagatggagacatc
ttagttggtaaagttacgcctaaaggtgttactgaacttactgcagaagaaagactgttg
catgctatctttggtgaaaaagcacgtgaagttagagacacttcattacgtgtaccacat
ggtgcaggcggtattgtgttagatgttaaagtcttcaatcgtgaagagggagatgatacg
ttatctcctggtgtaaaccaattagtacgtgtatatatcgtgcaaaaacgtaaaattcac
gtaggagataaaatgtgtggtcgtcacggtaacaaaggtgttatctctaaaattgttcca
gaagaagatatgccttacttaccagatggaacaccaatcgatatcatgttaaacccacta
ggtgtaccttcacgtatgaatatcggacaagtattagagctacatttaggtatggctgct
aaaaacttaggtattcatgttgcatcaccagtatttgatggtgctaacgatgacgatgta
tggtctactatcgaagaagctggtatggctcgcgatggtaaaactgtattgtatgatgga
cgtactggtgaaccattcgataatcgtatttctgttggtgttatgtatatgcttaaatta
gcacacatggtagatgataaattacatgcgcgttcaactggaccatattcattagtaact
caacaaccattaggtggtaaagcacaatttggtggtcaacgttttggtgaaatggaagta
tgggcacttgaagcttatggtgcagcatatacattacaagagatactaacttataaatct
gatgatactgtaggtcgtgtaaaaacttacgaagctattgtaaaaggtgaaaatatctct
agaccaagtgttcctgaatcattccgtgtattgatgaaagaattacaaagtttaggccta
gacgttaaagtgatggatgaacaagataatgaaatcgaaatggctgacgttgatgacgaa
gatgttgttgaacgtaaagtagacttacagcaaaaagatgctccagaatcacaaaaagaa
gtaactgattaa
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