Sclerotinia sclerotiorum: SS1G_11868
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Entry
SS1G_11868 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS1G_11868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_11868
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
SS1G_11868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_16
TPR_22
TPR_CcmH_CycH
TPR_2
TPR_19
TPR_14
TPR_1
TPR_17
TPR_12
TPR_8
TPR_11
ARM_TT21_5th
ARM_TT21_C
ARM_TT21
T7SS_EccA1_N
TPR_MalT
DUF3239
ANAPC3
E_motif
Motif
Other DBs
NCBI-GeneID:
5482965
NCBI-ProteinID:
XP_001586839
UniProt:
A7F3M2
A0A1D9QHC4
LinkDB
All DBs
Position
Unknown
AA seq
1419 aa
AA seq
DB search
MSGTKAALKAINAAVQSQKYDEAVQQARNLLNSDPNSYQANIFLGYAYSKSSKFTEAEEA
YEAATKIREGEPQAWQGLIQLYEKQGGSKVGQYQVAALHLAQIYQAHDDKYKCQDVIDKF
LAFAKNQGTRLQHRKSMEIILPDSPIYAYLEGRVPHPSHTYQIIAQITEFEEKERINKEI
GERRTRLGAKISQVTVEVKREVLRDSDLEEIYNKIIDWTTDDEIRRQYEEKLVQRCLEAL
VILPPGDAKTEKRAKVFKLATDMVIIKHPYKLAWDIAIEWQDPENVQSLDVNILREYIDF
FPTSGLAQVLRGFISSEISPFPPPPRTPALVPNKEDRDESSSDEDDGGGVTLDDFSMLAA
DRLLIMSEGMSDSLTSILAHRLMGEYYQFLDEHESVVELTRNAKRLAVEESNKIGLKFKN
ASQSFDVLLGTALVFYQSPKNHPEAKALFDGLLKENPFSTPALIGIGLIYEEEDDFPAAI
DFLGRALQRDPANVRVKAEAAWVKAINGDYIRGREELEECLPQIEAKDLKSRDLLAQTQY
RVGVCLWNIDTSKSARKDRKGAYSYFLASLKSNLNFAPAYTSLGIFYADYLNDKKRSRKC
FQKAFELSPSEVEAAERLARIFAGQGEWELVESVAQRVINSGKVRPAPGSKKKGISWPFA
ALGTAELNRQDYSKSIVSFQSALRITPSDYHSWVGLGESYHNSGRYVAATKAFHHAEQFE
SEIEQTQNGETWFAKHMLANVKRELGDFDDAIEGYKAVLQGRQAEFGVSIALIQTLVDSA
WDSIEKGLFGQATQRAAEAIEIASEILESKTDAFNLWRAVGDACAVYSWVWSRVNEFPDA
NVRKLLEQWTATYDIFGDVDGVSVDVVFAKGLYPADEEDGLYRTRCLHAAILAHKRAIHV
SSHDTHAQAVAYYNLGWIEHRAHVCLSPSLKKKSTRYQKAAVRCFKRAIELEAGNSEFWN
ALGIVTSNLNPKVAQHSFVRSLYLNERSAQAWTNLGTLYLLQNDYQLANDAFARAQSTDP
DYSHAWIGQGLLALMMGDEKESNLLFTHAMEISGSSSLITHRQYSQSTFDQILASKNASN
ASDLVKPLFALIQVQSMAPTDLVSKHLSSLFSERANDICSAVTTLSSICGAAEADYEVTE
SPESLSRFALAKADLARSQLANHEYEEAVESGDLALQLCNEDSGNELSVEARQKCRLSAH
LTVGLAQYYLNNLDTALEYFEPALKESKGNPDAVCVLAQVLWAHGTESSRSKAQDLLFEC
VESHPDHVQSVILLGIIALFNSDTEGIEAVTAELQTLRTNRNITDAEQARVGEVLRSIAA
FAEKDSELKVIAEIQKDVVLHPESMHGWSRLANHFSDQEAAEMAVLTAKKSVPPRGTLAA
TDLTTAYAGTGKVGDAQRGIMVAPWKKDAWEAFSNGISA
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaaccaaagctgcgctgaaagctataaatgctgcagttcaatctcaaaagtat
gatgaagctgttcaacaagctcggaatcttctcaattcggacccaaatagttaccaggca
aatatcttcttagggtatgcctacagtaaatcgtcgaaattcacagaagctgaagaagct
tacgaagctgcaaccaaaatcagagaaggggagccgcaagcatggcaaggtcttatccag
ttatacgagaagcaaggcggttccaaagttggacaatatcaagtcgcagctttgcattta
gctcaaatctatcaagctcacgacgacaaatacaaatgtcaagatgtcattgacaagttt
ctcgcctttgccaaaaatcaaggaacccgcttgcaacatagaaaatccatggagatcatt
ctacctgacagcccaatatatgcatatctggagggtcgtgttcctcatccttcacatacc
tatcaaattatagctcagattacagaatttgaagagaaagagcgcataaacaaggaaatc
ggagaaagacgaacgaggttgggtgccaaaattagtcaagtgactgtcgaagtcaaacgg
gaagttttaagagatagtgatttggaggaaatctacaacaagatcatagactggacgact
gatgatgagattcgtcggcaatacgaagaaaaactcgtccagagatgtctagaggccctg
gttattcttccgccgggagatgcaaaaacggagaaacgcgcaaaggtattcaagctggca
acggatatggtaataattaaacatccgtacaagttggcctgggatattgctattgagtgg
caggaccccgaaaatgtccaaagcttggatgttaatattctgcgagaatacatagatttc
ttccctacaagtggacttgctcaagttctacgaggattcatctccagtgagatttcgcca
ttcccgcctccaccacgcactccagctcttgtaccaaataaagaagatcgtgatgaaagt
agttccgatgaagacgatgggggaggagtgacattggatgacttctcgatgcttgcagca
gatcgcctgttgatcatgtcagagggcatgtcggactcacttacatcaatattggcacac
cgtctcatgggagagtactatcaatttctagatgaacatgaaagtgttgtggaacttaca
cgaaacgcaaagcggcttgcagtggaagaatcaaacaaaattggtttaaaatttaaaaac
gcatcccaatcttttgatgtcttgttaggtactgctctcgtattttatcagtcacccaag
aatcacccagaagcaaaagctttatttgatggactgctaaaggaaaatccgttctcaact
cctgctctcattggaattggtttgatttatgaggaggaagacgacttccctgctgctatt
gacttccttggacgtgcattacaacgagaccctgcgaatgttcgagtgaaggccgaagcc
gcgtgggtgaaggctattaatggcgattatatccgtggacgtgaagagctggaagagtgc
ttaccgcaaatcgaagctaaagatttaaaatctcgagacttactggcccaaacgcaatac
cgtgtgggtgtctgcctttggaatatagatacatcgaaatctgcacgcaaggataggaaa
ggtgcttactcatattttctcgcatcgttgaaaagcaacctcaattttgctcctgcatat
accagtctcggtatattttatgcagactatttgaatgataagaagagatctcgaaagtgt
ttccaaaaagcctttgagctctcaccctcggaagtggaagccgccgaacgcctggctagg
atattcgccggccagggcgagtgggagttggtcgagtcagtcgctcaacgagttatcaat
tcaggcaaggtcagaccagcacctggctcgaagaaaaagggtatcagttggccatttgcc
gctctaggaactgcggagttgaatagacaggactactcgaagagcattgtttcttttcaa
tccgcacttcgcatcacaccttctgattatcattcatgggtcggtcttggcgaaagttat
cacaattctgggcgctatgttgctgcaacaaaagcttttcatcatgccgaacaattcgaa
agtgaaatcgaacaaacacagaatggtgagacttggtttgcgaagcatatgctcgcaaat
gtaaaacgtgagctaggagactttgatgatgccattgagggctataaagctgtacttcaa
ggccgtcaagcggaatttggggtttccattgcgttgattcagactttagttgatagtgct
tgggatagtatagaaaaggggctttttggacaagctacccaacgtgcagctgaagctatt
gagattgctagtgaaattctagagagtaaaaccgatgctttcaatctctggagagctgta
ggcgacgcttgcgctgtctactcttgggtttggagccgtgtcaacgagttccctgatgca
aatgttaggaaactactcgaacaatggaccgctacttatgatatttttggagacgtcgat
ggagtttccgtggatgtcgtttttgctaagggcctatatcctgccgatgaagaagacgga
ttgtaccgaactcgatgtcttcatgcagcaatcctagcccacaagcgagctattcatgtt
tcatctcacgatacgcacgctcaagcagtcgcttattacaaccttggttggattgagcat
cgtgctcatgtctgcctgtctcctagtttaaagaagaaatctaccagataccagaaagca
gcagtgagatgtttcaaaagagctattgaactagaagcaggcaactcagaattttggaac
gcgttgggcattgtcaccagcaacttgaacccgaaggttgcacaacattcttttgttcga
agtctttacttgaacgagagaagtgctcaggcatggaccaacttaggaacactatatctc
ctacagaatgattatcagcttgctaacgatgctttcgcaagagctcaatcgaccgatcca
gactactcacatgcttggattggacagggccttctcgcgctaatgatgggcgatgagaaa
gagtccaatcttctttttacccatgctatggaaatctctggctcatcttctttgatcacg
catcgacagtactcacaatccacttttgatcagatcttagcttccaagaatgcttctaat
gcatcggatttggtgaaaccactgtttgcgttgattcaagtacaatcgatggcaccaact
gatcttgtctcgaagcacctttcatcacttttctccgagcgtgcaaatgatatttgttct
gctgtaacaaccttgagctcaatttgtggagcagctgaagctgattacgaagtcacggaa
tcaccagaatcactatctcgattcgctttggcgaaagcagatctcgcccgatctcagttg
gcaaatcatgagtatgaagaagccgtcgaaagtggagacctcgccttacagctctgcaat
gaagatagcggcaatgagctttctgtagaagctcgtcaaaaatgcagactatcagctcat
cttaccgttggcttagcacaatactacttaaataacttagatacagctcttgaatacttt
gagcctgctctcaaagaatccaaaggaaatcctgatgcagtatgcgtccttgctcaggtt
ttatgggctcatggcaccgaatcgtctcgttctaaagcacaggatcttctctttgagtgc
gtggaatctcatcctgaccacgtacaatctgtaattcttcttggaattatagctctattt
aattctgatactgaaggtatcgaagcagtaactgcagaattacaaactcttcgcaccaat
agaaatatcacggatgcagaacaagctcgtgttggggaagttcttcgttccatcgctgca
tttgccgagaaggattcggagctcaaggtcatagctgagatacagaaagatgtagttctt
catccagaatcaatgcatggttggtcgagattggccaaccattttagtgatcaagaggcc
gccgagatggcagtattgacggctaaaaaatctgtacctccgcgtggaacgctagctgct
acagatttgactaccgcgtatgcgggaacaggaaaggttggcgatgctcaaaggggtatc
atggttgcaccttggaagaaagatgcctgggaggcttttagtaatggcatctctgcgtag
DBGET
integrated database retrieval system
