Solea solea (common sole): 131446752
Help
Entry
131446752 CDS
T10853
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03013
Nucleocytoplasmic transport
ssoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131446752 (upf3a)
03015 mRNA surveillance pathway
131446752 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131446752 (upf3a)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131446752 (upf3a)
mRNA cycle factors
P-body specific factors
131446752 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
131446752
NCBI-ProteinID:
XP_058474171
LinkDB
All DBs
Position
2:20135737..20144546
Genome browser
AA seq
501 aa
AA seq
DB search
MHVAVFSALPALAITSQSRENTVTTRAWRRRWGEMRSEKDQMTVGKEKSVVEIQFRDIPR
EQDNIPGNLKPKEEKKEVFTKVVIRRLPPHLSKDQLEEQLSPLPSYDYFEFFPADQSLYP
HLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKA
GSIEEDPEYKRFLENYSCDDEKSMANPETLLGEIEAKTRELIAKRTTPLLEYIKNKKIEK
QRIREEKREERRRRELEKKRQREEEKRKRREEERRKRKEAEKQKKLSDKDIKIKLLKKSD
RDDDVDSDRIKDKSDTGEADRGKWEKAGGQMKSKDPKEKGQPESDKEQREQHGRRQRDKD
HRGKDEERKRQRHHYEFDKYMRRKDETKWGKGYCQDRAKKEGHHHGFSYCPDSGDKLGKE
DREDLSNRKERLRNKVSEKDRPAMQLYQPGARNRKRMNSAGKGYDCIPVGPSSESGADHC
YEVVTMATGLEKMFDKSKDEL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttgccgtcttttcagctctccctgcactcgcgataacatcacagtctcgcgag
aacacagtgacaacacgggcttggagaaggagatggggagaaatgcggtctgaaaaggac
caaatgaccgtgggcaaggagaaaagcgtcgtcgagatacagtttagggacatcccgaga
gagcaggacaacatccccggtaacctcaaaccgaaagaggagaagaaggaggttttcacc
aaggtggtgattcgaaggcttcctcctcacctgtcaaaagaccaactagaagaacagctc
agccctctgccctcctatgactattttgagttcttcccagcagatcaaagtctgtatcct
cacctcttctcgagagcatacatcaattttaaaaaccctgaagatatcctgctgtttaga
gacagatttgatggctatgtctttattgacaacaaaggtcaggaatatcctgcagtggta
gagtttgcccccttccagaaaatttccaagaagaagctaaaaaagaaagatgccaaagcc
gggagcattgaagaagatccagagtacaagcgattcttggagaattactcctgtgatgac
gagaagtctatggccaatcctgagactctcctgggagagatagaggccaaaaccagagag
ctcatagccaaacgaacaacacccctgttggagtacatcaaaaataagaaaatagagaaa
cagagaataagagaggagaagagagaggagcggaggaggagagagctggaaaagaaacgg
caaagagaagaggagaagaggaagcgacgagaggaggagagacgcaaacggaaagaggct
gagaagcagaagaaactgtccgataaagacatcaaaatcaaactcctgaagaagagcgac
agagacgacgatgtggattcggaccgaattaaggacaaaagtgacactggggaggcagac
agagggaaatgggaaaaagcaggaggacaaatgaagtcaaaggaccccaaggaaaaaggt
cagcctgagagtgacaaggagcaaagagaacagcacggacggcgacagagggataaagat
cacagagggaaagatgaagagcggaaacgacagagacaccactacgagtttgataaatat
atgcggcgtaaagatgagaccaagtgggggaagggctactgccaagaccgagccaagaaa
gagggacatcaccatggcttctcctactgtcctgacagtggagacaagctagggaaggaa
gacagggaggacctgagtaacaggaaggaacgcctccgaaacaaggtgagcgagaaggac
cgcccagccatgcagctctaccaaccgggcgcacgcaaccgcaaacgcatgaactcagca
ggcaaaggctacgactgcatccctgtgggcccctcatctgaatccggagcagatcactgt
tatgaggttgttactatggcaacagggctggagaagatgttcgacaagagcaaagatgag
ctgtga
DBGET
integrated database retrieval system
