Solea solea (common sole): 131447475
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Entry
131447475 CDS
T10853
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131447475 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssoe03041
]
131447475 (sf3b1)
03036 Chromosome and associated proteins [BR:
ssoe03036
]
131447475 (sf3b1)
Spliceosome [BR:
ssoe03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131447475 (sf3b1)
Complex B
131447475 (sf3b1)
Complex C
U2 SnRNP specific factors
131447475 (sf3b1)
Chromosome and associated proteins [BR:
ssoe03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
131447475 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Adaptin_N
UNC45-central
GST_N_4
Motif
Other DBs
NCBI-GeneID:
131447475
NCBI-ProteinID:
XP_058475277
LinkDB
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Position
2:complement(38192027..38207497)
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AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLVEEGEQGVGFVSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDTATSLLGQKKPGYNAPVAILNAIPQSDEQYDPFAEHRPQKIADREDEY
KARRRQMIISPERLDPFADGGKTPDPKMQVRSYVDVMLEQNLSKEEREIRLQMVEKAKAG
ELKAVNGSAASQAAAKRKRRWDQTADQTPSNTTPKKMSSWDQADSNAEQTPGHTPGHTPS
NSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGPS
TPLHTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEKEIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNMYLRYELEYAL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggc
atgaaggcttccctggtggaggagggagaacagggagtgggttttgtttccactggcttt
tttgaccaggagatctatggaggcagcgacagtcgctttgccggatatgtcacttccatt
gctgccaatgaacaggaagaggacgatgaagaggacacagctacaagcttgctgggccaa
aagaagcccggctacaacgcaccagtggcaatactcaatgccattcctcagtcagatgag
caatacgacccgtttgcagagcaccgtccacagaagatcgcagaccgcgaggacgagtac
aaagcccggcgcagacagatgatcatctcgcccgagcgtctcgacccttttgcagatggg
ggcaaaacgccggaccccaagatgcaggtcaggtcgtatgtggacgtcatgttggaacag
aacttatctaaagaggagagagagatccgtctgcagatggtggagaaggccaaagcaggg
gaactgaaagctgtcaacgggtctgctgccagccaagcagccgcaaaacgcaagcgtcgc
tgggaccagacagctgaccagaccccctctaatactacacccaaaaagatgtccagctgg
gaccaggctgactccaatgctgagcaaactccgggacacacccccggacacacgccctca
aacagccgatgggatgaaacccccggccgccccaaaggcagcgagaccccgggtgccact
cccagctcccgcatgtgggaccccactcccagccacacacccgcaggggctgccactccc
ggcagagacacccccggacacgccacgccgggccacggcggagccacgggcagcgtgcgc
aagaaccgctgggacgagaccccgaagacggagagggagaccccgggacacgggagcggc
tgggctgaaaccccgcgcacagaccgaggagacgagtcggtgggtgagactccaacgcca
ggagcatccaagaggaaatctcgatgggacgaaacgcctgccagtcagatgggaccctca
acgccactgcatacccccggaaagacccccatagggacaccagcgatgaacatggccacc
ccaacaccaggtcacctgatgagcatgacgccagagcagctgcaggcgtggaggtgggag
aaggagatcgatgaaaggaaccggcctctcacagacgaggagctcgacgccatgtttcca
gagggatacaaggttttgcccccacccgccggttacgtgccgatccgcactccggcccgc
aagctgtcggccacgcccactcccattggcggcatgaccggtttccacatgcaggtggag
gaccgcaccacgaagcagatgaacgaccagccctcaggaaacctgcccttcctcaaacct
gacgacatccagtattttgacaaactgctggtggaagtggacgagtccacgctgagccca
gaggagcagaaggagaggaagatcatgaagctcctgctgaagattaaaaatggaacgcca
cccatgaggaaggccgctctgcgtcagatcacagacaaagctcgtgagttcggagcgggt
cctctcttcaaccagatcctgccactgctcatgtcgcccactctggaggaccaggagcgc
cacctgctggtcaaagtcattgaccgcattctgtacaaactggacgacctggtccgacca
tacgtgcacaagatcctggtggtgattgagccgctgctgattgatgaagactactacgcc
agagtggagggcagagaaatcatctctaacttggcaaaggctgctggtttggccacgatg
atctccaccatgaggcccgacattgacaacatggacgagtacgtcaggaacaccacggcc
cgagccttcgccgtggtggcctcggctctgggcatcccctcgctgttgccgttcctcaaa
gccgtgtgtaagagcaagaagtcgtggcaggcccggcacactggcatcaagatcgtgcag
cagatcgccatcctcatgggctgcgccatcctgccgcatctccgcagtttggtggagatc
atcgagcacggtctggtggacgagcagcagaaggtgaggaccatcagcgctctggccatc
gctgctctcgctgaagctgccactccctacggtatcgagtctttcgactccgtgctcaag
ccactgtggaagggtatcaggcagcacagaggaaagggtctggctgctttcctcaaagcc
atcggttacctgatcccgctgatggacgccgagtacgccaactactacaccagagaggtg
atgctgatcctcatcagggagttccagtccccggacgaggagatgaaaaagattgtgctg
aaggtggtgaagcagtgttgcggcactgacggtgtggaagcgaactacatcaagacggag
atcctgcctccgttcttcaagcacttctggcagcacaggatggctctggacagacgtaac
tacagacagttggtggacaccacggtggagttggccaacaaagtgggagcggcggagatc
atttctcgcatcgtggacgacctgaaagacgaagctgagcagtacagaaagatggtgatg
gagaccatcgagaaaatcatgggcaacctgggcgccgccgacatcgaccacaagctggag
gagcagctgatcgacggtatcctgtacgccttccaggagcagacgacagaggactcggtg
atgctgaacggtttcggcacggtggtgaacgccctcggcaagcgcgtcaagccgtacctg
cctcagatctgcggtacggtgctgtggcgtctgaacaacaagtcggccaaagtccgtcag
caggccgctgacctcatctcccgcactgccgtggtcatgaagacctgccaggaggagaag
ctgatgggtcacttgggtgtggtgctatacgagtacctgggagaggagtatcctgaagtg
ttgggaagcatcctgggagctttgaaggccatcgtcaatgtcatcggtatgcacaagatg
actccacccatcaaagacctgcttcctcgtctgactcccatcctgaagaacagacacgag
aaggtgcaggagaactgcatcgacctggtgggcagaatcgctgacaggggagcggagtat
gtgtcggccagagagtggatgaggatttgttttgagctgctggagctgcttaaggctcac
aagaaggccattcgcagagccaccgtcaacacgtttggttacatcgctaaagccatcggt
cctcacgacgtcttggcgacgctgctcaacaacctgaaggtccaggagcgccagaacagg
gtctgcacaaccgtggccatcgccatcgtcgccgagacctgctcgccgtttaccgtgctg
ccggcgctcatgaacgagtaccgcgtgcccgagctcaacgtccagaacggtgtgctcaag
tccctctccttcctgttcgagtacatcggtgagatgggcaaagactacatctacgccgtc
acgccgctgctggaggacgcgctcatggacagagacctggtccacagacagacggcgagc
gccgtggtgcagcacatgtctctgggcgtgtacggtttcggctgcgaagactcgctcaac
cacctgctgaactacgtgtggcccaacgtgtttgagacgtcgcctcacgtcatccaggcc
gtcatgggagcgctggaggggctgagggtcgccatcggaccctgtcgcatgctacagtac
tgcttacagggtttgttccatccggcccggaaggtccgagacgtttactggaaaatctac
aactccatctacatcggctcgcaggacgcgctcatcgctcactacccgcaggtgtacaac
gacgacaagaacatgtacctgcgctacgagctggagtacgcgctgtaa
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