Solea solea (common sole): 131463238
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Entry
131463238 CDS
T10853
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04382
Cornified envelope formation
ssoe04510
Focal adhesion
ssoe04512
ECM-receptor interaction
ssoe04518
Integrin signaling
ssoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131463238 (col4a4)
04518 Integrin signaling
131463238 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131463238 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131463238 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
131463238 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssoe04147
]
131463238 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
ssoe00536
]
131463238 (col4a4)
Exosome [BR:
ssoe04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
131463238 (col4a4)
Glycosaminoglycan binding proteins [BR:
ssoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131463238 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
131463238
NCBI-ProteinID:
XP_058491015
LinkDB
All DBs
Position
7:19083861..19114701
Genome browser
AA seq
1655 aa
AA seq
DB search
MLATSVFTAPRSYTWLWCLLMILTHPPSALGGDQMELCAGRDCSTCQCFPAKGARGAPGG
LGQQGNQGPPGFPGPQGPPGEKGHRGDEGFTGAQGMKGDSGSPGVFGFPGLEGVPGHPGP
AGGPGFPGLDGCNGTRGQRGEPGLPGEQGPDGEAGIPGLKGFRGDPSVYFKQHSGIPGDD
GLSGLPGLQGEQGLPGPMGSVGLAGLDGTNGLPGLPGPRGPPGEEGRSIPGQKGEEGDQG
LQGPPGPFEYVDPPEDSYLKGEQGRRGVKGACGPPGRLGQDSFPGIKGEKGLLGFPGTRG
DFGNSGLPGEKGFKGIRGSPGLPGLIGREGLKGVMGDLGPKGLTQETEVSHTGEDGDPGP
PGLSGPPGDMGLMGMHGPPGAPGRSIPGPPGFVGQSGVPGSKGDRGDPGLVIKDGPTPGE
PGKPGRPGPRGMKGEPGIPGRYCIAGQQGPPGAQGFPGVKGSHGDCSCGCPRTLSGPLGP
EGDPGHPGFPGVPGTLGQIGEKGLPGDVGEIGQQGFGGVPGVKGFKGQKGDFIVVDTKGE
KGNQGQLGPPGRKGFSGRRGPNGLPGAPGEPGPQGVSFSSFPGDGGFPGFSGPKGLLGSP
GSLGIGIIGALGERGPPGDPGLPGIQGASGPKGTNGDTLPCVPRNPGPPGQKGDTGDSGN
AGHPGPSGFQGTTGPDGIKGNQGQSGLPGLPGRQGPQGFVGDTGDEGLEGFSYGGEPGTP
GIPGSPGLRGPAGESDVGPSGPIGFPGPLGSPGSKGVPGPPGSDGLQGALGLSGGPGLKG
QRGQDGAPGISGPLGSSPNSCDAGKPGSRGALGPRGPIGPPGFQGEKGEIGAVGPPGFGL
EGPVGKLGPPGFPGSPGPQGKTGPSGDPGQPGTVGEKGLLGPQGKYGGPGPRGQTGFPGT
PGKTGERGFDGRDGAPGCEGPKGEKGRRGNPGPLGLTRYIPIKGEKGKQGAPSISGFPGS
RGSKGVLGPTGNPGFPGLSGPPGITGPPGKPGSCGIPGPPGLPGRQGPPGPMGFPGEIGD
PGDVGRPGKSGKPGREGCTGQKGDKGDSVSSPGLPGDKGAPGDFGQSGPCGPCGDPGVPG
FIGDPGQNGRKGDPGHRGDPGLPGAIGPRGPRGRPGFPGLPGKAGNSGPPGPQGDIGLQG
PPGPLGLHGLDGLKGVKGDMGTRGLAVTGPPGLIGLPGKKGPQGLQGPCGTSQPGQQGLI
GPPGPKGPPGSYGPPGQTGPNCEDPVLGPSGDPGCLGPDGDPGCPGDMGDPGTNPPVPGD
EGDNGNMGYWGAVGLKGQPGPRGLPGITGDCGVKGKKGSQGLMGQPGNQGPRGSPGSPGP
IGPKGLEGPMGLKGEKGGLAPFPIYPPSQQGPPGPPGPPGALGEAGVIGESGQTGHKGLK
GDPGSEGPRGFMGLPGPDGDQGAPGLPGMTGTVGGEGGSGPIGDRGPPGQSTRLNPGFLL
VMHSQSRQIPTCPLNMRALWSGYSLLYLEGQEKAHTQDLGRAGSCMRVFSTMPFSSCNIG
ACSYASRNDKSYWLSTTAALPSIPVDGPSIEEHISRCVVCESPSLPVALHSQTSKQPDCP
PNWTSLWTGFSFLMHTGAGDEGGGQSLTSSGSCLTDFRTQPFVECQGPRGTCHYFANIYS
FWLTRVDTSISTTTTLTDAWQQRSNIGRCNVCMRL
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaacttccgtcttcactgccccccgcagctacacctggctctggtgtctcctg
atgatcctgacgcatcctccctcagctctcgggggagaccagatggagttgtgcgctggg
cgggactgctccacctgtcagtgtttcccggccaaaggagcaaggggggcaccaggtggt
ctgggacaacagggaaatcaggggcccccaggcttcccaggtcctcagggacctccagga
gaaaagggccacagaggagacgaggggttcactggagcccaaggaatgaaaggagactcg
ggaagtcctggtgtttttggatttccgggtttagaaggagttccgggtcacccgggtccg
gctggaggtcctggttttccaggtctggatgggtgtaatgggaccagaggacagagggga
gagcctggacttcctggagaacaaggaccagatggagaagcgggtattccaggcctgaag
gggtttcgaggagatccgtcagtttacttcaaacagcattctggaatacctggagatgat
gggctcagtggactaccaggactacagggtgaacagggacttcctggcccaatgggaagt
gtgggtctagcaggactggatgggaccaatggtctccctggtctgcctggtcccaggggc
ccacctggagaagaaggtcgatctatacctggacagaaaggagaagagggtgatcagggc
ctgcaggggccaccggggccctttgaatatgtcgaccctcctgaagactcatacctcaaa
ggagagcagggtcgtcgaggggtcaaaggagcttgcggaccaccgggacgtctgggtcag
gacagtttccctggaatcaaaggagagaaagggcttctgggattccctgggacgcgggga
gattttggtaattccggtctgcctggagaaaaaggttttaaggggattcgaggaagccca
ggtctgcctggtctgattggacgagaaggtcttaagggcgtgatgggagatctgggacct
aaaggcctcactcaagagacagaagtctcacacacaggtgaagacggggaccccgggcca
cctggactcagtggccctccaggtgacatggggctgatgggaatgcacggacccccggga
gcccctggcagatcaatacctggtccaccagggtttgtggggcagagtggagttccagga
tccaagggggatagaggagatccaggtctggtgattaaagatggacccacacctggagaa
cctggaaaaccaggccgccctggacctagaggaatgaaaggagagccagggattccaggt
cgttactgtattgctggtcaacaaggacctccaggggctcagggcttcccaggggtcaaa
ggctctcatggtgactgttcctgtggctgtcctcgtacactaagtggccccctagggcct
gaaggggacccgggccacccagggtttcctggagtcccggggacactagggcagatagga
gagaaaggcttacctggtgatgttggagaaattggacaacagggttttgggggggttccg
ggtgttaaagggttcaaaggtcagaagggagatttcattgtggtggacacgaaaggtgag
aagggaaaccagggccagcttggcccacccggcagaaaaggattctctggtagaagagga
cctaatgggctcccaggggcccctggagagcctggtccccagggagtcagttttagcagt
tttcctggggacggaggcttccctggattttcaggtccaaagggattattaggatctcca
ggttctcttggaattggtatcatcggtgctcttggagagcgtgggccccctggtgaccca
ggacttccaggaatccagggtgcctctgggccaaaagggaccaatggtgacactctgccc
tgtgtacccagaaaccctgggccccctggacagaagggagacacaggagattcaggtaat
gcaggacacccgggaccttctggttttcaaggcaccactggacctgatggtattaaagga
aaccaaggacagtctggactacctggactacctggacgacaaggacctcaaggctttgtt
ggagatactggagatgaaggccttgaaggattcagttatggtggagaaccgggaactcct
gggatcccaggctcccctggactgaggggcccagcaggggaatcggatgttggtccttct
ggacctatcggcttcccaggaccactgggttctccaggatctaagggagtccccggaccc
cctggcagtgatggactacaaggagccctgggtctgtccgggggcccgggactaaagggc
caaagaggacaggatggagcaccggggataagtggtcccctaggttcctcacctaactca
tgtgatgcaggaaaaccaggttctaggggtgcccttggtcctcggggaccaataggaccc
ccaggctttcaaggggaaaagggtgagattggggcagtgggtcctccaggttttggcctt
gaaggtcctgtaggtaaactaggccctccaggttttccagggtccccagggccccagggc
aaaactggccccagtggagacccaggacagcctgggactgttggtgagaaaggtctgttg
gggccccaaggcaagtatggcgggccagggccccgaggacagactgggttccctggaact
ccagggaagacaggagagagagggtttgatggacgagatggagctccaggatgtgaaggg
cctaaaggagagaaaggtagaagagggaacccgggacctctgggattgaccaggtacatt
cctatcaaaggagagaaaggaaaacaaggagcccccagtatcagcggcttccctggatca
cgaggaagcaaaggtgttctgggacctacaggtaatccagggtttccaggactcagtgga
cccccaggcatcacaggcccccccgggaaaccaggttcctgtggtatcccaggaccacca
ggcttaccaggacgtcaaggacctccaggacccatgggcttccctggagagataggagat
ccaggtgacgtgggaaggccaggaaaatctggcaaaccaggccgtgaaggatgtactggg
cagaaaggtgataaaggagactctgttagttctcctggcctacctggagacaaaggggct
cctggagactttgggcaatcaggaccttgtggaccttgtggagatcctggagtacctggt
ttcattggggatccaggacagaatggacgaaaaggagatccaggtcaccgtggagaccca
ggtctaccaggtgcgattggtccccgaggtcccagaggtcgtccaggttttccagggctt
cctggcaaagcgggtaacagtggtcctcctggacctcaaggtgacataggtctccaaggt
ccacctggaccactgggacttcatggactagatggactgaaaggagtaaaaggggacatg
gggaccagaggtctggctgtgacaggtcctcctggtctgattggccttccagggaagaag
ggtcctcaaggtcttcaaggtccctgtggcactagtcagcctggacaacagggactcata
ggccccccaggacccaaaggacctccagggagttatggacctccaggtcaaactggacca
aactgtgaagacccagtcctaggcccttctggagatcctgggtgtcttggacccgatgga
gacccaggttgtcccggggacatgggagatcctggtacaaatcctccagttcctggggat
gaaggagacaatggaaacatgggttactggggggcagtgggtctaaagggacaaccaggt
ccaagaggattgcctggcatcactggagactgtggagtaaaaggtaagaaggggtcccag
gggttgatgggacaacccggaaatcagggtccaagaggttcccctggctccccagggcct
ataggacctaaaggacttgagggaccaatgggtctaaagggagaaaagggaggacttgcc
ccctttcctatttatcctccttctcaacagggccccccaggtcctcctggcccccctgga
gcacttggagaggctggtgtcattggagaatctggccagacaggacacaaaggtttgaag
ggggatcccgggtctgagggaccaagaggatttatggggctcccaggtccagatggagac
cagggagcaccaggcctaccgggaatgactggtacagtgggaggcgaaggtggttctggg
ccgataggagaccgcggtcctcctggacagtcaactcgcctgaatccagggttcctcttg
gtaatgcacagccaatcaaggcagattcccacctgtccgctaaacatgagggccctatgg
agtggatatagtctgctgtacctggagggacaggagaaggcacacactcaggatctgggt
cgggctggctcatgtatgcgggtcttctcaaccatgcccttctcctcctgtaacattggt
gcctgctcttacgcaagtcgtaacgacaaatcctattggctgtccacgacagcggccctt
cccagcattcctgtggacgggccctctattgaagagcacatcagccgatgtgtggtgtgc
gaatctccctctttacctgttgcactgcacagccagacgtccaaacagcctgactgcccc
cccaactggacaagcctgtggactggattctctttcctcatgcatacaggagcaggtgat
gagggcggtggtcagtctctgacctcatctggtagctgtctgacagacttcaggacccag
ccctttgtagagtgtcaggggccacgaggaacctgccactactttgccaacatttatagc
ttctggctgaccagagtggacaccagcatctccaccaccaccacactgacagatgcatgg
cagcagagaagtaatattgggaggtgcaatgtctgcatgaggttgtga
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