Solea solea (common sole): 131466868
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Entry
131466868 CDS
T10853
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04510
Focal adhesion
ssoe04512
ECM-receptor interaction
ssoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131466868 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131466868 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131466868 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssoe00535
]
131466868 (col9a1a)
Proteoglycans [BR:
ssoe00535
]
Extracellular matrix (ECM) proteoglycans
Others
131466868 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
131466868
NCBI-ProteinID:
XP_058496415
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Position
10:complement(12602254..12621432)
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AA seq
686 aa
AA seq
DB search
MALFKTSRASLLVLLLQIVLICSAQRGPVGPRGPPGPPGVAGVPGVDGIDGDRGEDSTVN
GGPGPDGDNGRDGVPGASGLPGADGPVGPPGDPGPVGLKGPKGEPGLRGPSGVPGVGPDG
LDGIPGTDGLPGELGKVGLPGAKGKRGPVGLPGSAGPRGSPGVYQGEDLCPNACPAGLNG
HSGLAGMKGHKGVKGESGEPGRQGHKGYEGDQGAPGDVGAQGLPGPGGARGLPGILGSKG
ERGPRGSPGELGPRGIQGAPGDRGRRGVIGEMGPGGVQGDRGSKGIRGVPGSKGGPGLPG
PDGREGIPGLPASKGLPGKNGAPGDAGQQGLPGLPGAYGHKGHSGVKGVKGNLGVVGQMG
SPGKEGERGEQGEVGPVGPRGGTGEQGGRGFDGPPGSPGARGSKGNPGLPGLPGPAGYRG
QKGDRGAVGLDGPMGGQGSSGAEGTSGERGDLGEQGEPGEKGSIGPPGETGNKGPEGGRG
QQGKEGKPGQPGPRGMQGDMGVPGFPGTQGPAGKSPTDTHIKEVCMRVMQEQLAQLAASL
RRPESGIAGLPGPPGPPGPAGPAGENGFPGHTGSRGLPGLKGPAGVMGRKGAKGDLGDRG
DRGTTARGHKGAPGAPGLPGEPGRHAYGKDGREGQPGPRGAAGIPGAPGLPGPAGQSGYC
ESSQCVLSMVPPPPLKDSGMKGPNEM
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggctctgttcaagaccagtcgggcgtccttgttggtgcttttactgcaaattgtgctg
atttgctctgctcagaggggcccagtcggtcccagaggccccccagggccccccggagta
gctggtgtgcccggagtggatggcattgatggcgacagaggagaagactccacagtgaac
ggtggcccaggccctgatggtgataacggcagagatggagtacctggagcttcaggtctt
ccaggcgcagacggacctgtgggacctcctggagatccaggtccagtgggcttaaaggga
ccaaagggtgaacctgggctgcgagggccctctggagtaccaggtgtaggacctgacggg
ctcgatggtattcctggtactgatgggcttccaggggaacttggcaaagttggactgcct
ggagcaaaaggcaagagaggtccggttggtcttcctggttctgcagggcctcggggttct
ccaggtgtttatcaaggcgaggacctgtgtcccaatgcctgccctgctggtctgaatggg
cattctggtctagccggcatgaaaggccacaaaggggttaaaggtgaatctggtgaacct
gggagacaaggacacaagggatacgagggggatcaaggagcaccgggagatgttggcgct
caaggactaccaggcccaggtggagcaagaggcctcccaggaatattgggctccaaaggt
gaaaggggacctcgtgggagtcctggtgaactgggccctcgaggaatccagggagccccg
ggcgaccgaggccgaagaggagtcataggcgagatggggccggggggagtgcagggcgat
cgaggttcaaaaggaataagaggagtgccaggatcaaaaggagggcctggtttaccaggt
ccagatggtcgtgagggaatacctgggctgccagcatccaagggtcttccagggaaaaat
ggggctccaggtgacgcagggcaacaagggcttcctggtttaccaggtgcttacggtcat
aaaggacacagtggagtgaagggtgtcaagggaaacctaggagttgtgggacagatgggg
tctccagggaaagaaggcgagcgtggtgagcagggagaggtgggaccagtcggacccaga
ggaggaacaggtgaacaaggaggacgagggtttgacgggcctccaggatcaccaggagcc
cggggaagcaaggggaacccaggcctcccgggtcttcctggtcctgctggttatcgtggt
caaaaaggagacaggggtgcagttggtctcgatgggcccatgggaggacagggatcttca
ggtgctgaggggacatcaggagagcgaggagacctgggtgaacaaggagaaccaggcgag
aaaggatcgataggcccaccaggagaaacaggaaataaaggacctgagggtggacgagga
cagcaggggaaagaaggcaagccaggacaaccaggaccacggggcatgcagggcgacatg
ggggtaccaggcttccccggaacacaggggccagcgggaaaatcaccaacggatacacac
atcaaagaagtctgcatgagggtaatgcaagagcagctggcccagctagcagccagcctg
aggaggcctgagtcaggtattgctgggctgccaggtccccccggcccacctggacctgca
ggccctgctggggagaacggtttccctggacacaccggatcacgaggcctacctggtctg
aagggacctgctggggtgatgggtcgcaaaggagccaaaggtgacctgggtgacagagga
gacagaggaaccacagcaagagggcacaaaggagcacctggtgcccccggtctgccaggt
gaacctggacgacatgcttacggcaaagatggccgtgaagggcagccaggaccacgcggc
gctgccggcattcccggcgctcccggacttcctggtcctgccggtcagagcggttactgt
gagtcttcacagtgtgtcctgtcgatggtgccgccaccaccactgaaagactctggcatg
aagggccccaatgagatgtga
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