Solea solea (common sole): 131469038
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Entry
131469038 CDS
T10853
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04510
Focal adhesion
ssoe04512
ECM-receptor interaction
ssoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131469038 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131469038 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131469038 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssoe00535
]
131469038 (col9a3)
Proteoglycans [BR:
ssoe00535
]
Extracellular matrix (ECM) proteoglycans
Others
131469038 (col9a3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
131469038
NCBI-ProteinID:
XP_058499852
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All DBs
Position
11:4520148..4538641
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AA seq
678 aa
AA seq
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MTVFSALWVLLLCQLLTSSSAQRPGPRGAPGPPGPPGPLGKDGTDGKDGPAGLPGKAGSK
GKAGIPGSPGKPGLPGLPGVDGLTGPDGPAGTDGPAGEAGEAGPPGPAGPPGRGRSGAPG
LPGTNGFPGGVGPQGPVGGEGASGLPGPPGPDGPPGFPGTLHDLNGDLLCPAICPPGPPG
PPGMPGFKGHTGHKGDKGELGKDGEKGDGGPPGPPGIAGTVGLQGPRGLRGLQGPMGAVG
DRGLTGFRGKPGVAGIIGKTGDGGEKGPYGFKGPKGEIGKIGPKGGPGGSGPKGEPGMPG
RDGKDGTPGLDGEKGDAGRHGTVGEKGPNGLPGLQGKAGVNGSKGETGDAGASGETGPSG
EPGIPGDIGVPGERGIAGPRGVAGGIGPAGNAGPQGGKGYQGGKGALGDPGLPGPTGIRG
EFGERGPVGASGAKGDMGVAGSDGLPGENGEPGHFGPVGQKGESGKHGELGPKGVTGPQG
ELGARGPPGKQGPMGFQGEQGIPGFAGRTGVPGKLASEQHIRELCGSLIDGEIAQLAANL
RRPLAPGMVGRPGPSGSPGQPGVVGSIGHPGSRGPPGYRGLPGELGDSGPRGDVGEPGDK
GSLGKAIDGPSGDQGQQGLPGVPGIVKDGRDGSAGDPGEPGEAGRVGRTGHRGPPGICDT
SACHGPTVVGKTSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgttctctgctctttgggtgctcttactgtgccagcttttgacatcatcctca
gcgcagaggccgggacccagaggagctcctgggccaccagggccgccaggaccactgggg
aaggatggcactgatggcaaagatggacctgctggtcttccagggaaagcaggttccaaa
gggaaagcaggaataccaggatctccagggaaaccaggtctgccaggacttccaggggtg
gatggtttgacgggtcctgatggtcctgctgggacggacgggcctgcaggagaagcaggt
gaagctggacctcctggacctgctggacctcctggcagagggagatcaggagctcctgga
ctccctggaaccaatgggtttccaggtggcgttggaccccagggtccagtgggtggtgaa
ggtgcttcaggacttcctggacctcctggtcctgatggacccccaggttttcctggtact
cttcatgacctcaacggtgaccttctgtgtcctgcaatctgtccccccggcccccctggt
cctcctgggatgccaggattcaagggtcacacgggacacaaaggagacaaaggagagctt
ggaaaagatggagagaagggtgacggtggtccacctggtccaccaggtattgccggcact
gtgggtctgcagggcccacgtggtctgagaggtttgcagggtcctatgggagctgtagga
gacagaggtctgactggtttcagaggcaagcctggtgttgccggcatcatcggaaagaca
ggtgatggcggtgaaaagggaccatatggatttaaaggacccaaaggagaaattggtaaa
attggtcccaaaggaggtccaggaggatcaggacccaaaggggagcctggaatgcctggc
agagatggcaaagatggtacaccaggattagatggcgagaagggtgatgccggacgccat
ggtacagttggagagaaaggaccaaacggtcttcctggtctacaaggaaaagctggtgtc
aatgggtctaaaggagaaactggtgatgcaggcgcatctggggagacgggaccctctgga
gagccaggtattcctggtgatattggcgtcccaggagagcgggggatagccggacccaga
ggagtggctggaggcatcggaccagcaggaaacgctgggcctcagggagggaaaggatat
cagggaggaaaaggagctttaggggatccaggtctcccaggtccaacaggaatccgtgga
gagtttggtgaaaggggtccagttggagcttcaggagctaaaggagatatgggtgtggca
ggaagtgacggtttaccaggagagaatggagaacctggtcactttggaccagttggacaa
aaaggagagtcaggaaaacatggagaactgggaccaaagggcgtgacaggtccacaggga
gagcttggagcaagagggcctccagggaaacaagggccaatgggcttccagggggaacag
ggaataccaggatttgcgggaaggacaggtgtacctggtaaactggcgagtgagcagcac
atcagagagctgtgtggctccttgatcgatggtgagatcgcacagttggctgctaacctc
cgaagacccctggctcccggtatggtcggccgcccgggcccctctgggtctccaggacaa
ccgggagttgttggctctattgggcatccaggttcccgtggaccaccagggtacagaggc
ctgccaggagaacttggagactctggtcccagaggtgatgttggtgaaccaggtgacaag
ggatccctcggcaaagccatcgacgggccatctggagaccagggacaacaaggtcttcca
ggagtacctggaatagtcaaagatggtcgcgatggatctgcaggagatccaggtgagcct
ggcgaggcgggcagggtgggtaggaccgggcaccggggacctcctggaatctgtgacaca
tcagcctgtcacggaccaacagtcgtcggaaaaacctccaaccccaaaaaccattag
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