Solea solea (common sole): 131473978
Help
Entry
131473978 CDS
T10853
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04510
Focal adhesion
ssoe04512
ECM-receptor interaction
ssoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131473978 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131473978 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131473978 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssoe00535
]
131473978 (col9a1b)
Proteoglycans [BR:
ssoe00535
]
Extracellular matrix (ECM) proteoglycans
Others
131473978 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
131473978
NCBI-ProteinID:
XP_058507636
LinkDB
All DBs
Position
15:16960005..16973148
Genome browser
AA seq
679 aa
AA seq
DB search
MDRALNIRGPLLVLLLQLVLICSSQRNEGPPGPPGPAGVPGIDAVSGERGADGEDGLPGP
DGDSGKPGSSGLPGIPGNDGLTGPVGDPGSDGPPGQKGEPGKAGPRGTAGVGPDGPPGPL
GHGGLLGEVGKVGPPGAIGVRGPQGPRGPTGPRGAAGMLGSADLCPNSCPPGTSGHPGLP
GMKGHKGVKGDAGEPGKQGHKGEEGEQGSSGEVGAQGPRGSQGNRGAMGMMGPKGELGPR
GHDGEPGPQGVMGATGDQGQRGAMGEPGPTGEKGTLGSRGITGVPGPKGDAGLSGPDGRE
GIPGMPGAKGGIGKSGVPGEVGLQGFPGMPGTYGPKGLNGPKGDSGEPGFAGTIGPAGKT
GERGEQGEGGSVGPIGEPGAIGAQGPVGSSGKLGARGPIGDPGLPGLPGPSGHPGVKGER
GERGEAGPKGDQGAQGDEGNPGDKGDGGESGESGTKGEVGNLGETGKRGPEGSRGQPGIE
GPSGSPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GAAGLPGKPGPPGPPGAAGDNGFPGHSGTRGLPGLKGPPGPLGLKGPKGEIGDRGSRGPT
ARGPKGQPGPPGFPGEPGKSGYGQDGRDGQRGPPGTHGQPGAPGSPGAAGPNGYCDPSSC
NLQAGAAHQSLDVKGPAGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggccctgaacattagagggccactgctggtgctgctcctgcagcttgtcctt
atttgctcctctcaacggaatgaaggacctcctggccctcctggacctgcaggtgtccca
ggaattgacgccgtttctggggaaaggggagcagatggcgaggatggacttcccggacct
gatggtgattcaggtaaacccggctcctcgggattacctggaatacctggaaatgacggt
ctgactggccctgttggagatcctgggtccgacggtcccccaggacagaaaggtgaacct
gggaaagccggacctcgtgggacagctggtgttggaccagatggaccccccggaccactt
gggcatggaggacttctaggtgaagtgggaaaagttggaccacctggtgccataggtgtg
agaggaccacagggacctcgaggaccaacagggcccagaggcgcagctggaatgcttggc
agtgctgacctgtgtccaaactcttgtccacctggaacttctggacatccgggccttcct
ggcatgaagggtcacaaaggtgtaaagggtgacgcaggagaaccaggaaaacaaggacac
aagggtgaggaaggagaacagggaagttcaggagaggtcggagcccaaggaccgaggggc
tctcagggaaatcgtggagccatggggatgatgggccccaagggtgagctgggacctcgg
ggtcatgatggagaaccaggtccccagggtgtcatgggagcaactggggatcaaggtcaa
agaggtgcgatgggtgagcctgggcctacaggtgaaaagggtactctagggtcaagagga
atcacaggtgtgccaggtcccaaaggagatgctggtttatcaggtccagatggtcgagaa
ggtatacctgggatgccaggagcaaagggaggcattggaaagtcgggcgttcctggagag
gtcggacttcaggggtttcctgggatgcctggtacatatggaccaaaaggcttgaatggc
cctaagggagattctggtgaaccaggctttgctggaacaataggacctgctggcaaaaca
ggtgagcgcggagaacagggagagggcggatctgttggacccattggtgaaccaggagct
ataggagcgcagggtcctgtaggttcatctggaaaactaggcgccaggggacccataggt
gaccctggacttcctggtctccctggtccctctggtcatcctggggtgaaaggagagcgg
ggagaacgtggagaagcaggacccaaaggagaccagggagcacaaggtgatgagggaaac
cctggtgacaaaggcgatggtggtgaatcgggagaatctggaaccaaaggggaggttggc
aaccttggcgagactggaaaacgaggtcctgagggtagtcgagggcagcctggcatcgag
gggccttctggctcacctggaccccggggcatgcagggaaacagaggtccacctggagtc
agagggtcccaggggcctgcgggcaaagagccaagtgatcagcacatcaaacaagtttgc
atgcgagtcatgcaagaacagctggcccagttagcagctagcttaaggaggccagaatcc
ggcgcagctggtttacctggaaaacctggacctccagggcctcctggggctgcaggagac
aacggcttccccgggcactccggaacgaggggtctcccgggactcaaagggccaccagga
cctctaggattgaaaggaccaaaaggcgaaataggagacagaggctccagagggcccact
gcacgaggacccaaaggtcaaccaggacctcctggatttccaggtgaaccaggcaaatcc
ggctatggtcaggatggtcgggacgggcagaggggaccccctggaactcatggacagccc
ggtgcacctggatctcctggtgcagctggtcctaatggttactgtgacccgtcctcctgc
aacctccaggcaggagctgctcaccagtctctggatgtgaaggggcctgcagggaactaa
DBGET
integrated database retrieval system
