Streptomyces malaysiensis HNM0141: I1A49_26235
Help
Entry
I1A49_26235 CDS
T07406
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssoi
Streptomyces malaysiensis HNM0141
Pathway
ssoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I1A49_26235 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssoi03021
]
I1A49_26235 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssoi03400
]
I1A49_26235 (rpoB)
Enzymes [BR:
ssoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I1A49_26235 (rpoB)
Transcription machinery [BR:
ssoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I1A49_26235 (rpoB)
DNA repair and recombination proteins [BR:
ssoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I1A49_26235 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QPI57942
UniProt:
A0ABX6W901
LinkDB
All DBs
Position
6443270..6446752
Genome browser
AA seq
1160 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKINEPLEVPNLLALQTESFDWLLGNAAWKARVEA
ALDSGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTDKGTFCINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSVKVIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGSAAPLDAGVLTVEDVIASIKYLVKLHAGETETVGDNGQSVVVETDDIDHFG
NRRIRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQTNPLSGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFIETPYRKVVDGVVTDEVHYLTADEEDRFVIAQANAPLTNDLHF
AENRVLVRRRGGEVDYIPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMMRQ
AVPLIKAESPLVGTGMEYRCAVDAGDVIKAEKDGVVQEVSADYVTVANDDGTYTTYRVAK
FSRSNQGTSFNQKVVVDEGARVIAGQVLADGPSTEDGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWKVEGDEDWMNRLRTIGADEVQPGTNVATPV
FDGAREDELAGLFEHTVPNRDGERMVLPSGKARLFDGRSGEPFPDPISIGYMYILKLHHL
VDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDV
TGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFR
AAEELGIDLSRREPSSVEEV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgactgccaatacgaacaatggcgccagcaccgccccg
ctgcgcatctcctttgcgaagatcaacgagcctctcgaggttccgaacctcctcgcgctt
cagaccgagagcttcgattggctgctcggcaatgccgcgtggaaggctcgcgtcgaggct
gcgctggacagcggtcaggacgtccccaccaagtccggtctggaggagatcttcgaggag
atctccccgatcgaggacttctccgggtcgatgtccctgaccttccgtgatcaccgtttc
gagccgccgaagaactcgatcgacgagtgcaaggagcgcgacttcacgtacgccgctccg
ctcttcgtcacggccgagttcaccaacaacgagaccggtgagatcaagtctcagacggtc
ttcatgggcgacttcccgctcatgaccgacaagggcaccttctgcatcaacggcaccgag
cgtgtcgtcgtctcgcagctggtccgctcgccgggtgtctacttcgactcctccatcgac
aagacctccgacaaggacatcttctcggtcaaggtcatcccctcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtgcgcatcgaccgcaagcgcaagcag
tccgtcaccgtcctcctgaaggcgctcggctggaccaccgagcagatcctggaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccccccacgcgtgaggccgcg
cagacgctgctggagaacctctacttcaaccccaagcgctacgacctcgccaaggtcggc
cgctacaaggtcaacaagaagctgggttcggccgctccgctggacgcgggcgtcctgacg
gtcgaggacgtcatcgcctcgatcaagtacctggtgaagctgcacgccggtgagaccgag
accgtcggggacaacggccagtccgtggtcgtcgagaccgacgacatcgaccacttcggc
aaccgccgtatccgtaacgtcggcgagctcatccagaaccaggtccgcacgggtctggcc
cgtatggagcgcgtcgtgcgcgagcgcatgaccactcaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagacgaacccgctgtccggtctgacccacaagcgccgg
ctgaacgcgctcggccccggtggtctctcccgtgagcgggcgggcttcgaggtccgtgac
gtgcacccgtcgcactacggccgcatgtgtccgatcgagacgcccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcgtacggccgggtcaacgcgttcggtttcatcgagacc
ccgtaccgcaaggtcgtcgacggtgtcgtcaccgacgaggtccactacctcacggccgac
gaggaggaccgcttcgtcatcgcccaggccaacgccccgctgacgaacgacctgcacttc
gccgagaaccgcgtcctggtccgccgccgtggcggtgaggtcgactacatccccggcgac
gacgtggactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgcgatgatc
ccgttcctggagcacgacgacgccaaccgcgccctcatgggctcgaacatgatgcgccag
gccgtgccgctgatcaaggcggagtccccgctggtcggcaccggtatggagtaccgctgc
gcggtcgacgccggcgatgtcatcaaggccgagaaggacggtgtcgtccaggaggtctcc
gccgactacgtgacggtggccaacgacgacggcacctacaccacctaccgggtggccaag
ttctcccgctccaaccagggcacctccttcaaccagaaggtcgtcgtggacgagggcgcc
cgggtgatcgccggccaggtgctcgccgacgggccgtccaccgaggacggcgagatggcg
ctcggcaagaacctcctggtggcgttcatgccgtgggagggccacaactacgaggacgcg
atcatcctcagccagcgtctggtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgggacaccaagctgggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctggccgacctcgacgagcgcggcatcatccgcatcggcgcc
gaggtcgtggccggagacatcctggtcggcaaggtcaccccgaagggcgagaccgagctg
accccggaggagcgcctgctgcgcgcgatcttcggtgagaaggcccgtgaggtccgtgac
acctcgctgaaggtgccgcacggcgagatcggcaaggtcatcggcgtgcgcgtcttcgac
cgcgaggagggcgacgagctgccgcccggcgtgaaccagctggtccgcgtctacgtggcg
cagaagcgcaagatcaccgacggtgacaagctggccggccgccacggcaacaagggcgtc
atctccaagatcctccccgtcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccggatgaacccggggcaggtgctggagatc
cacctcggctggctggcctcccagggctggaaggtcgagggcgacgaggactggatgaac
cggctgcggacgatcggcgcggacgaggtccagcccggtaccaacgtcgcgaccccggtc
ttcgacggcgcccgcgaggacgagctggccggcctgttcgagcacaccgtgccgaaccgg
gacggcgagcgcatggtgctgccctcgggcaaggcccggctgttcgacggccgctccggc
gagccgttcccggacccgatctcgatcggctacatgtacatcctcaagctgcaccacctg
gtggacgacaagctgcacgcccggtccaccggtccgtactcgatgatcacccagcagccg
ctgggtggtaaggctcagttcggtggccagcgcttcggcgagatggaggtgtgggcgctg
gaggcatatggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgacgtg
accggccgagtgaaggtctacgaggccatcgtcaagggcgagaacattcccgagcccggc
atccccgagtccttcaaggtgctcatcaaggagatgcagtccctgtgcctcaacgtggag
gtgctgtcgtccgacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttccgc
gctgcggaggagctcggtatcgacctgtcccggcgggagccgagcagcgtcgaagaggtc
tga
DBGET
integrated database retrieval system
