Salvia splendens (scarlet sage): 121748807
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Entry
121748807 CDS
T07627
Name
(RefSeq) cleavage stimulation factor subunit 50-like isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121748807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121748807
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121748807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_NOL10_N
Beta-prop_IFT122_1st
Ge1_WD40
Cytochrom_D1
Beta-prop_IFT140_1st
Beta-prop_HPS5
TPM_phosphatase
Motif
Other DBs
NCBI-GeneID:
121748807
NCBI-ProteinID:
XP_041999269
LinkDB
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Position
9:complement(4144684..4155505)
Genome browser
AA seq
436 aa
AA seq
DB search
MDITNGLEQTFQDGKIYRHVNALIVAHLRDSNFNQAASAVASATMTPLNVEFPPNKLLEL
VAKGLAVEKDEMLRGVSSTTLFESSIPSAYGSVPAPRVVSLDFSAVHNVKGASKSFPKHE
TRHISEHKNVARCARFSPDGRFLATGSADTSIKLFEVSKVKQMMLPDQRDGAPVRPVVQT
FYDHLQPINDLDFHPHNTILISGAKDRTIKFFDFSKTVARKAFKIIQDTHNVRSVSFHPS
GEFLLAGTDHPIAHLYDVNTFQCYLSANVQETSNGAINQVRYSSTGGIYVTASKDGAIRL
WDGVTSQCVRSILSAHGTAEATSASFTKDQKYVLSSGKDSMVNLWEVGTGRLVKQYSGAT
HTQLRSQAVFSETEEFVLSIDELSNEIVIWDTLTAEKIARWPSNHVGSPRWLEHSPVEAS
FVTSGTDRSIRFWKEA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggacatcacaaacggattggagcagacgtttcaggacggaaaaatttaccgccatgtc
aatgctctcattgtcgcccatctccgtgacagcaattttaatcaggcagcgagtgcggtt
gcatcagcaacaatgacgcctctaaatgtcgaatttccccctaacaagctccttgagttg
gtggccaagggtcttgcagtggaaaaggatgagatgttaagaggggtatcttcaactaca
ttatttgaatcaagcataccttcagcatatggctcagtgcctgctccacgagttgtttct
ttggatttcagtgccgtgcataatgtcaaaggagcgtcaaagagttttccaaagcatgaa
acacgtcatatttcagagcacaagaatgtagctagatgtgcaagatttagtcctgatgga
agatttcttgcaactggaagtgctgacacatcgataaagctatttgaggtatcaaaagtc
aaacagatgatgcttccagatcaaagagatggtgcccctgtgcgacctgttgtacagaca
ttttacgaccatctacaaccaataaatgacttggatttccatcctcacaacacaattttg
atttctggggccaaagatcgcacaataaagttctttgatttctcaaaaacagtagcaagg
aaagccttcaaaattattcaggatactcacaacgtgaggtccgtatcttttcatccctct
ggagaatttcttttggcaggaactgaccatcctattgcacacttgtatgatgttaatact
ttccagtgctatctatctgcaaatgttcaagagactagcaatggagctataaaccaggtc
agatattcgtcaactggtggcatctatgtaacagcttcgaaagatggagctattcggtta
tgggatggggtgacgtcgcagtgtgtccgctcaattcttagtgctcatggaacagcggaa
gcgactagtgcaagtttcaccaaggatcagaagtatgttctttcttctggaaaagattcc
atggtgaatctttgggaggttgggacaggtaggttagtcaagcaatattccggggcgaca
catacacaactgcggtcccaggctgttttcagtgaaactgaggaatttgtactctccatt
gatgaattaagcaatgagattgttatatgggatactcttacagctgagaaaatagctaga
tggccttcgaaccatgtgggaagtcctcgttggctcgagcattcaccagtcgaggcatca
tttgtcacatccggaactgacagatcgattaggttttggaaagaagcataa
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