Salvia splendens (scarlet sage): 121755081
Help
Entry
121755081 CDS
T07627
Name
(RefSeq) sm-like protein LSM2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121755081
09123 Folding, sorting and degradation
03018 RNA degradation
121755081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121755081
03041 Spliceosome [BR:
sspl03041
]
121755081
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121755081
mRNA degradation factors
5'-3' decay
Lsm complex
121755081
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121755081
Complex C
U2 snRNP components
121755081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
121755081
NCBI-ProteinID:
XP_042006300
LinkDB
All DBs
Position
11:complement(18394711..18396421)
Genome browser
AA seq
101 aa
AA seq
DB search
MVFCLFNLHLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYP
HMLSVRNCFIRGSVVRYVQLPPEGVDVELLHDATRREARGG
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atggttttctgtctcttcaatttgcatttgttcttctcgtatttcaaggatttggtgggg
agggaagtgacggtggaattgaagaacgatttagcgattagagggactctacattcggtt
gatcaatatctcaacattaagctggagaatactagggttgttgatcaggacaagtacccc
catatgctttcagtgcgaaactgcttcattcgaggatctgtcgtccgatacgtccaattg
ccacccgagggagttgatgttgagcttctgcatgatgccactagaagagaagcacgaggg
ggttaa
DBGET
integrated database retrieval system