Salvia splendens (scarlet sage): 121759289
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Entry
121759289 CDS
T07627
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121759289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121759289
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
121759289
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_19
TPR_16
TPR_8
TPR_17
TPR_9
TPR_CcmH_CycH
TPR_15
TPR_6
TPR_12
TPR_20
BTAD
Motif
Other DBs
NCBI-GeneID:
121759289
NCBI-ProteinID:
XP_042010757
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All DBs
Position
12:1143030..1150290
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AA seq
1178 aa
AA seq
DB search
MALEEEEECDFSDLKQLRESASSNPDDATVRFNLGVVLWEKGERRPELRHKAVEHFMVAA
KLNPQNAATFRYLGHYYARVSPEPQRALKCYQRAVALNPDDSDAGEAICDLLDEGGQDNL
MIAVCREASEKSARAFWAFRRLGYLQAHHKNWAEAIQSLQQAIRGFPTSADLWETLGLAY
GRMGMFTAALKSYGRAVELDDSRIFALVESGNISLMLGSFRKGIEQFQQALIISPHNVSV
NYGLASAFLGLAKECVNSGAFRWGASLLEEAAEVSMHVTSLAGNFSCSWKLHGDIQLMYA
RCNPWTEEARPEQVDEISFKSSVSTWKRTCFIASRNASRSYQRALHLAPWLANAYIDVAI
AADVSLSFKESPKDDWSVWPIAEKMCFGGILLEGYNDEFWVALACLSSNAALKQHALVRG
LQLDVSLAVAWAYLGKLYRLEGEKKLAQQAFDRARSIEPSLALPWAGMSADADVRKFEQN
EAYECCLRAVQISPVADFQIGLAKLALHSSCLSSSEVFAAIQQALLRIPQYPESHNLNGL
VCESRSDYQGAVASYRLARYALKYFADETSESHSDNISINLARSLYMAGNASEPVEECEH
LRQKGQLDTVGLHIYALCLWRLGKNDMALSATRSLASSILSMEENLAAASISFICRMLYN
ISGQESAITSILKMPKQLFSSSKISFIVSAIHVLDPNNQLEAVVSSSRSFVTSREDIISM
HMLITVGKLLKSGNENSLGIQKGVDHLRKAVHMFPNTSVLRNLLGYLLLSSKEPGYLCLA
TRCSSLDLSDYQKDDGLKSAYEIVGAGNVACYAIGSPNQKFPLPTCRRQCHSGSGAIQVL
QKYLHQEPWNFNARYLLTLNCLQKTRAEKFPQHGCHVVERLTAVALSDQNFSTKDVSRQY
QNFQLLLCAAEVNLQQGNNTECFRLLRGALGASLHSTHLFFAHLLLCRAYASEDDFVNLR
KEYKYCLELGTYSHIGWICLKFIESRYGLQDDSTVLALKFEDCSKDLKTSWNIWAALFSL
VQGLISISLGDFVAAEEFLSQACCVADDESCFFLCHGAICMELARQKCESHYITRAIRSL
KKAKDTSSDPLPLVSLLLGQAEASLGSKEKWLVNLRDEWFSWPPENRSAELLFQMHLLSR
ESSHGGSTMRWILRAIHMNPSCSRYWKFLLKEYDDSQT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggctctggaagaagaagaagaatgcgatttctccgatttaaagcaattgcgagaatca
gcgagttccaatccggatgacgccactgtccgtttcaatctgggggtggtgctatgggag
aagggggagagaaggccggaattgaggcataaagcggtggagcatttcatggttgcagct
aaactcaatccgcagaatgctgctacatttagatacttaggtcattactatgctcgcgtt
tcgcctgagccgcaacgagctctcaagtgctaccagagagctgttgctcttaatcctgat
gattctgatgccggagaagcaatttgtgatttattggatgagggaggccaagataacttg
atgattgctgtttgtcgtgaagcttctgagaagtctgccagggctttttgggcattccgt
cggctgggatatcttcaggctcatcataaaaactgggctgaagccatacagagccttcaa
caagccatacgtggatttcctactagcgctgatttgtgggagacactaggtcttgcttat
ggacgaatgggtatgtttacagcggcacttaagtcatatggtagagctgttgagttggac
gactcgaggatatttgctctggttgaaagtggaaatatttctttgatgcttggctctttc
agaaagggaattgagcaatttcagcaagcactgataatatcaccacacaatgtgtccgta
aattatgggcttgcttctgcttttcttggtttagcgaaggaatgtgtcaattctggtgcc
tttagatggggagcttcacttttagaggaagcagctgaagtttccatgcatgttacatct
ttagctggtaacttttcatgttcatggaagctacatggagatattcagcttatgtatgcc
agatgtaacccatggacagaggaagccaggcctgagcaagttgatgagatatctttcaaa
tcttctgtcagtacatggaaaaggacctgcttcattgcttctagaaatgctagtcgctcc
tatcagcgtgctttgcacttggccccttggctagctaatgcatatattgatgttgccatt
gcagcagatgtcagtttatcttttaaggaatctcctaaagatgattggagtgtttggcct
attgctgaaaagatgtgctttggtggtatattactcgagggttacaatgatgaattttgg
gttgcattggcatgcttatccagtaatgctgcactaaagcaacatgctttggtgcgtgga
ttacaattggacgtgtctttagcagttgcgtgggcttaccttgggaagctctatagactg
gaaggtgaaaagaaactggcccaacaagcatttgaccgtgctagaagtatagaaccttca
cttgcattaccatgggcaggcatgtcagcagatgctgatgttagaaagtttgagcagaat
gaagcgtatgagtgctgtctacgggctgtacagatatccccggttgcagatttccagatt
ggtcttgcaaagcttgcgttgcattcaagttgcttgtcatcttccgaggtctttgcagcc
atccaacaggcgttgctgcgtattccgcagtatcccgagtctcacaatttgaatggtcta
gtatgtgaatcaagatctgattatcaaggtgcagtcgcctcctacaggctggccagatat
gctctaaagtattttgcagatgaaacatcagaatctcattcagacaatatatccatcaat
ttggcacgatcactttacatggctggaaatgcaagcgaaccagttgaagagtgcgaacat
ttaaggcaaaaaggacagctcgacaccgtgggcctgcatatatatgctttatgtttatgg
agactgggcaagaatgatatggctctatctgcaacaagatcacttgcttcaagcatttta
tctatggaagaaaacctagctgctgcctccattagcttcatctgtaggatgctttacaac
atatctggacaggaatctgcgatcacaagcattttgaaaatgcccaaacaactttttagc
agttcaaaaattagttttattgtttctgctattcatgttctggacccaaacaatcaactt
gaggcagttgtttcgagcagccgttcctttgttacatctcgtgaagacattatttcaatg
cacatgttaattacagttggaaaacttctgaaaagcggaaacgaaaactcccttggaatt
caaaagggagtagatcacctcagaaaagcagttcacatgttccctaacaccagtgtattg
agaaatcttcttggttatctgttgctatcaagcaaagaaccgggatatctctgtcttgca
acccgatgctcttcactggatttgtctgactatcaaaaggatgatggtctcaaatcagca
tatgagatcgttggtgctggaaatgttgcttgttatgccattggaagtccaaatcaaaag
tttccactaccgacctgcagacgtcaatgccattcgggatctggggccattcaagtgctg
caaaagtatttgcatcaagagccttggaacttcaatgcaaggtatttacttacgctaaac
tgcttacagaagactcgtgcagaaaaatttcctcagcatggttgccatgttgtagagcgg
ctaacagctgtggctctgtctgatcaaaatttctctaccaaagatgtatcaaggcaatat
cagaattttcagcttcttctctgtgctgccgaggttaatctgcaacaaggcaataatact
gaatgcttcagacttctgagaggtgccttaggcgcatcacttcatagtacccatctcttt
ttcgcacatttgctactttgccgtgcatatgcctctgaggatgattttgtgaacctgcgc
aaagaatacaaatattgtttggagcttggaacttattctcacattggctggatttgtttg
aagtttattgaatccagatatggcctgcaagatgattctaccgttttagctctaaaattt
gaagattgctccaaagatctcaagacgtcatggaatatatgggcggctctgtttagtttg
gtgcagggtttgatttctatatcgcttggtgattttgttgctgctgaagaattcctttca
caagcatgctgtgtagctgatgacgagagttgtttctttctttgtcatggcgccatttgc
atggagcttgccagacagaagtgcgagtcacattacataacacgtgccataagaagtctg
aagaaggcgaaagatacctcttctgatcctttgcctcttgtttcactgttgctgggtcaa
gcagaagcaagccttggctcaaaagaaaagtggctcgtcaaccttcgcgatgaatggttt
tcttggcctccagaaaaccgatctgctgagctcctatttcaaatgcatttgctatctaga
gagtcttctcatggtggcagtacgatgagatggattctacgagccatccatatgaatcct
tcgtgttcgagatattggaagttcttgttaaaggagtatgacgactctcaaacctag
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integrated database retrieval system
