Salvia splendens (scarlet sage): 121782860
Help
Entry
121782860 CDS
T07627
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
sspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121782860
09124 Replication and repair
03420 Nucleotide excision repair
121782860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121782860
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121782860
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121782860
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121782860
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121782860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
121782860
NCBI-ProteinID:
XP_042036770
LinkDB
All DBs
Position
20:21188843..21196036
Genome browser
AA seq
767 aa
AA seq
DB search
MRNGDKNQPSKRIKFSKDEHRASTAQDYSSHFAEDVEDDPRDGEGKKRDFSKLELKPDHM
NRPLWACADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLE
TETIISVLNKLSKTKLPKEMIDFIHNSTANYGKVKLVLKKNKYFVESPFPDVLKTLLKDD
VIGRARISSEGSRGADGFTVGKSAVEIDGIGTHEELLNEAELAAAAEEKETHAFEIDPTQ
VENVKQRCLPNALNYPMLEEYDFRNDPVNPDLEVELKPHAQPRPYQEKSLSKMFGNGRAR
SGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIKEDQICRFTS
DSKERFRGNAGVVVTTYNMIAFGGKRSEEAEKIIEDIRNREWGLLLMDEVHVVPAQMFRK
VIALTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY
AMKLRKPMIYGATSHPERTKILEAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAG
SRRQEAQRLGRILRAKGKPQDRVAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
SFKVITSLPPADTGPELSYHHLDDQLTLLGKVLSAGDNEVGLEQLEEDADDIALQKARRS
AGSMSAMSGANGRVYMEYSTGKKLQGQMKSKPKDPAKRHHLFKKRFG
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacggcgacaaaaatcagcccagcaaaaggatcaagttctcaaaggatgaacat
agggcttcgacagcacaagactatagttctcacttcgcagaagatgtggaggatgatcct
cgtgatggcgagggaaaaaagagggatttctcgaaattggaactcaaacccgatcacatg
aatcggcctttatgggcttgtgccgatggtcggattttccttgaaactttttcctcgcta
tacaaacaggcgtatgatttcctcattgctattgctgaacctgtttgcaggccagagtcg
atgcacgagtacaacttgactcctcattctttatatgcagcagtgtcagtgggacttgag
acagaaaccatcatatccgtcttgaataaactatcaaaaaccaagcttcctaaagaaatg
attgatttcattcataattctacggctaattacggcaaagtgaagttggtcctgaagaaa
aacaaatacttcgtggaatccccatttccagatgtgttaaagacgttgcttaaagacgat
gttataggacgagctagaatttcctcagagggatcacgtggagctgatgggtttacagtt
ggaaaatctgctgttgaaatagatggtattggtactcatgaagagttgcttaatgaagct
gagttggcggctgcagctgaagaaaaagaaactcatgcatttgaaattgaccctactcag
gttgaaaatgtgaagcaacgatgcttacctaatgctttaaattacccaatgttggaggag
tacgacttcagaaatgatccggtcaatcctgatcttgaggtggagttgaagccccatgcg
caaccacgtccttatcaagaaaagagtctcagcaagatgtttggaaatggcagggcccgc
tctggtattattgtgctaccttgtggtgcggggaagtctttagttggtgtatctgcagct
tgcagaataagaaagagttgtctttgtttggctaccaatgcggtgtctgtggatcaatgg
gctttccagttcaaattgtggtcaaccatcaaagaagatcaaatatgtcgttttacatct
gacagcaaagaaagattccgtggcaatgctggggtggtggtgacaacatacaatatgatt
gcgttcggtggaaaacgttctgaagaagcagaaaagataattgaagacataaggaatcga
gaatggggactgcttctcatggatgaggtgcacgtggttcctgctcaaatgttcaggaag
gtcatcgctctaactaaatctcactgcaaactcgggctcactgccactcttgtgagagag
gatgaaaggattacagatttgaacttcctaattggtccaaagttgtatgaggcgaattgg
ttggatcttgtgaaaggaggatttatcgcaaatgttcagtgtgcagaagtttggtgtcca
atgacaaaggaattcttcgccgagtacttgaagaaagaaaattcaaagaaaaaacaggct
ctttatgtgatgaaccccaataagttccgggcttgtgagttccttatccgattccatgaa
cagcagcgtggtgataagattatagtttttgcagataatctttttgctctgacagaatat
gcaatgaagcttcgaaaacctatgatctatggtgccaccagccatcctgaaagaacaaaa
attcttgaagcatttaaaaccagtcgagatgtgaataccatttttctctcaaaggttggt
gataattctatagatattcccgaggctaatgtgataattcagatttcatcacatgctggt
tcaaggcgtcaagaggctcaacgacttgggcgtattctcagggccaaggggaagcctcaa
gacagggttgctggaggcaaggaagagtacaatgcatttttctactctcttgtatctacg
gacactcaggagatgtattattcaacaaaaaggcagcagtttttgattgaccaaggttat
agttttaaggtgatcacaagcttgccgccagctgatacaggccccgagttgagctaccac
catcttgatgatcagcttacacttcttggaaaggttctaagtgcaggcgacaatgaagtt
gggctggagcaactagaagaagacgcagatgatattgcacttcagaaagcccgtcgctca
gctggatccatgagcgcaatgtctggagccaacggaagggtatacatggagtatagtact
ggtaaaaagctgcaaggccagatgaagagtaaacctaaggatccggctaagaggcatcac
ttgttcaagaaacggtttggctga
DBGET
integrated database retrieval system
