Salvia splendens (scarlet sage): 121784397
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Entry
121784397 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121784397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121784397
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121784397
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121784397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
121784397
NCBI-ProteinID:
XP_042038478
LinkDB
All DBs
Position
2:4124343..4142618
Genome browser
AA seq
2399 aa
AA seq
DB search
MVTFSSKLSGQIRFLLQDVNDSNSDSVFQELCNYAMHGMEASILLLQACFDHIDIYSRDL
KDMKLQPIFASIFKYLLDKPNFSSILSETLRSKAINEELLLNLSDALHLSVPEKIGVGLA
LSNSEDHDTRMCGKNFCMSQITELCANPVAFESSKLIHHILVFLSRSEGLSKHVDSFMQM
LFLVQPKDGAQFVIIPFLHDELLEDNFFRNSELLNEGGEEDFDAILAEMEKEISMADVMC
ELGYGCTANVAQCKEMLSLFLPLTDATVAKILGTVARTYVGLDDSQNVFATFRSAHGGNS
VLDMPSLNSWNVDVLVDSIKQLALGTNWINVMENLDHEGFYIPNEAAFSFFMSVYKHACQ
EPFPLHAICGSVWKNVEGQLSFLKYAVSAPPEVFTFAHSERQLSYDDAVPGHTLQSGPNC
AWSCHDLLVVLCQLSEMGHASLVRYVLESPLNNFPEVLLLGMAHVNTAYNLIQNEVASAV
LPMALKKASASGLLYTLWHVNRNLLLRGLIDSVNLDPDSVNRIFDACQEIKVLPQVLDMF
PFYLGIRLAVIASNREIMDLDSWLSARLVSSKDAFYEECIKFLKDVQIGDQDISPNHLHP
SGSLLNMYLEACPTVLKALQSHSGVLSSNHLSEEIEKLDVSHMRSNSRMRSAGGSDAAAD
SYAEDIETEANAYFHQMFSGNLSIDAMIQMLTRFKESPEERKKSIYECMIANLFEEYNFF
SKYPERQLRIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFSFGTKALEQFV
DRLIEWPQYCNHILQISHLRAAHSDLVEFIERALNRISAAHSEPDVGHSTTNDHHHGLVQ
SSAPTMEPAGSTFSLIGPGSTQSGLPVSPSIPLPRRPPSSLDERKPSTTIFNHMKQTQSS
SAQPVTAPSSEMPTLQKSHSGAVLSVQSASPGFPRSSRSTSARFGSALNIETLVAAAERR
ETPVEVPASEAQDKISFIINNLSAANVEAKAKEFSEILNPQFYPWFAQYMVMKRASIETN
FHDLYLKFLDKVNLKPLFREIVQATYENCKVLVGSDLIKSSVEERSLLKNLGSWLGKITI
GKNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCSNSIAFQPPNPWTMAILGLL
AEIYAMPNLKMNLKFEIEVLFKHLSVDLKDVTPTSLLKEKVREVEGNPDFSNKDVGSSQP
PIMNEVKPGIISTLNHVEMPLDVAASPLPGSHSRIMSQQYAAPLHHSSGSLTEDEKLVSL
GFSDQLPSAHGLLQGQTQYAVNQVPVPAANIEQQVVVNKKLQAYGLHLHFQSVLPIAMDR
AVKEIVSSIVQRSVSIATQTTKELVLKDYAMEPDETLTRNAAHLMVARLAGSLAHVTCKE
PLRGSISTQLRNSLQGFNISTDLSEQAVQLVTNDNLDLGCVLIEQAATDKAVQSIDGDIA
QQLSIRRKHRESVGASFFDASLYAQGQMSILPEALRPKPGQLSHSQQRVYEDFARFPGQN
RSTQSSNTAPVGLSASSGGGGLSRQFASTSGQISGSIYSPGLISTGIGAVPQTLDMGSDE
IEPFGSQVPTSLPSAHISVGDGPQTPENDTIPSFPPVSTTDVQVMEPSSSAKEPGNAAQP
TNATLSSERPGTNVTEPLITTGDALEKYQTISEKLENQLANEAKEVEIQAVIAEVPAVIL
RCISRDEAALAVAQKAFKGLYENASNCAHVDAHLAILAAIRDVSKLVVKELTSWVLYSEE
DRKFNRDITIGLINSELLNLGEYNVHMAKLLDAGRNKAATEFAISLIQTLVMNDSKVISE
LHNLVDALAKLAARPGSPESLQQLIEIAKNPANAGNLLPLAVGKEEIARTPRGDKKTTVP
GTSREEFSVTDLVDFDPAGFSEQVSALFTEWYQICELPGANDAACARHVSLLQQRGLLKG
DEMTDRFFRRIMELSVSHCLSSETLSFLAIDIYAKLVFSVLKFFPADQGSSKLSLLPKVL
AVTVKFILKDAEERKASFNPRPYFRLFVNWLLDLCSLDPVFDGANFQVLTGLANAFHAIQ
PLKVPGFSFAWLELVSHRSFMPKLLTANAQKGWPYFQRLLVDLFQFMEPFLRKVQLGEPV
HFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTP
NLKIDLLPEITQSPRILSEVDAALKAKQIKNEVDEYLKTRQQGSAFLTELKQKLLLSPND
VERAGTRYNVPLINSLVLYVGMQAQQLQAGHAQSMANMSAFLVSAALDIFQTLIMDLDTE
GRYLFLNAVANQLRYPNNHTHYFSFILLYLFHESNQETIQEQITRVLLERLIVNRPHPWG
LLITFIELIKNPRYSFWSRSFTRCASEIEKLFESVSRSFGGPKPVDDSLVSAGIPDNLH
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgttctcctccaagctttcgggccagattaggtttctgctgcaggacgttaac
gattccaactctgattcggttttccaagaactatgcaactatgcaatgcatggaatggag
gcgagcatattacttctgcaagcctgtttcgaccacatcgatatttattccagggatttg
aaggatatgaagctgcaaccgatatttgcttcaatattcaaatatttattggataaacct
aactttagttcaatattaagtgagacactgcggtctaaagccatcaatgaagaactactt
ctgaatctttctgatgctttacacttgtcggtacctgagaaaattggagtaggtcttgct
ttgtctaattctgaagatcatgataccaggatgtgcggaaagaatttctgcatgagtcag
atcacagagttgtgtgccaatcctgttgcatttgagtcttctaagttaattcaccatatt
cttgtgtttctcagtcggtctgaaggcctctctaagcatgtagattcattcatgcaaatg
ttatttcttgtgcaaccgaaggacggggcccagtttgtcatcataccttttcttcatgat
gaactacttgaagataacttcttcagaaactcagagttgttgaatgagggtggtgaagag
gattttgatgccattctagcagaaatggagaaagaaattagcatggctgatgtgatgtgt
gagctaggatatgggtgtactgccaatgtggctcagtgcaaagaaatgttgtcgcttttc
ttaccgctcactgatgccacagttgcaaagatacttggaacggttgccagaacttatgta
ggtcttgatgacagccaaaatgtctttgctacattccgctctgcccatggtggtaacagt
gtcctggatatgccatctttgaattcttggaatgttgacgtccttgtggattcaatcaag
caacttgctctgggaactaactggattaatgtcatggagaatctggatcatgagggattt
tatatccccaatgaggcagctttttcatttttcatgtctgtctacaagcatgcatgccag
gaaccattccctctccatgctatttgtggatctgtttggaagaatgttgagggtcagcta
tcttttctaaaatatgcagtgtctgctccacctgaagtctttacgtttgctcattctgaa
aggcagctgtcctatgatgatgctgtgcctggacatacattgcagtctggacctaattgt
gcttggtcatgtcatgacctgctggtggttctgtgtcagctatcggagatgggtcatgca
agtttagtgagatatgtccttgaatctcctcttaataacttcccagaagtattgcttctt
ggaatggcccatgttaatactgcgtacaatcttatccaaaatgaggttgcatccgctgtg
cttcctatggctctcaaaaaggcttctgcaagtggtttattatacactctgtggcatgtt
aatcgtaacttgttgctacgtggacttatagattccgtgaatcttgatccagacagtgtc
aataggatttttgatgcttgccaggaaataaaggtacttccccaagtactagatatgttt
cctttttaccttggaattcgcttggctgtaattgcatctaatagagaaatcatggacctt
gatagctggttgagtgctcgattagtgtccagtaaagatgctttctatgaggaatgcatc
aagtttttgaaggatgttcagattggagatcaggacatctctcccaatcacttgcaccct
tctggttctcttttgaatatgtacttggaagcttgccccactgtcttaaaggcacttcag
tctcattctggtgtgctttcatctaatcacttgtctgaggaaattgaaaaattggatgtc
tctcatatgcgttctaattcaagaatgagaagtgctgggggttccgatgctgctgctgat
agttatgctgaagacattgaaacagaagcaaatgcatacttccatcaaatgttctctggt
aatctatctatcgacgctatgattcaaatgcttacccgcttcaaggaatctccagaagaa
aggaaaaagtcgatatatgagtgcatgattgctaatctatttgaggaatacaattttttc
tcaaagtaccctgaaaggcagctgaggattgcggcagtactttttggatcactcatcaag
catcaactagtgactcaccttacgctgggcattgctttacgagctgttttagatgcttta
aggaagcctgcagattcaaaaatgttctcctttgggaccaaggcattggagcagtttgtg
gaccgtctcattgagtggccacagtactgcaatcatatcctgcaaatatctcatttgcgg
gctgctcattcagaccttgtagaatttatagagcgggcacttaacaggatctcagctgct
catagtgaacctgatgttggccatagtacaactaatgatcaccatcatggtctcgttcaa
tcttctgctccaactatggagcctgcaggctcgactttttctctgattggaccaggcagc
acacagtctggattgcctgtttcaccttcaatcccactaccacggagaccaccgagttca
cttgatgaaaggaaaccctctacgactatctttaatcacatgaagcaaacacaatcgtct
tctgcgcaacctgttactgctccttcaagcgaaatgcctacccttcagaagtcacacagc
ggtgctgttctgtcagtacaatctgcatcaccgggctttccacggtcttctagatcaacc
tcagcaagatttggctctgctttaaacattgagaccctcgttgctgcagctgagagaaga
gaaactcccgtagaggttccagcatcagaagctcaggacaagatatcttttattataaat
aacttgtctgctgcaaatgttgaggctaaagctaaagagtttagtgaaattttaaatcct
cagttctatccgtggttcgcacagtatatggttatgaagagggcaagcattgaaacaaat
tttcatgatttgtacttgaagtttctggataaagtaaatttgaaacctttgttcagagag
attgtacaggccacttatgaaaactgcaaggttctcgtcggatctgaccttataaagtct
agtgtggaagaacgatcactgctgaaaaatttaggaagctggcttgggaagattacaatc
ggcaaaaatcaagttctaagggcacgggagatagatccaaaatctttgattatagaggca
tatgaaaagggactcatgatagctgttattccctttacctcaaagattctggaaccctgt
tcgaacagtattgcatttcagcctcccaacccttggacaatggcgattcttggattgctt
gctgaaatttatgcaatgccaaatttgaagatgaatctcaaatttgagatagaggtcctg
tttaagcatttaagtgtcgaccttaaggatgttacacctacttctcttctgaaggaaaaa
gtcagagaagttgaaggtaatcctgatttctcaaataaggatgtcgggtcttcacaacca
ccaataatgaatgaggtgaaacctggaataatttcgacattaaaccatgttgagatgccc
cttgatgttgctgcctctccccttcctggtagccactctcgtataatgtctcagcagtat
gctgctcctctccatcattcatctggatctttaacggaggatgagaagctagttagcttg
gggttttctgaccagctgccttctgctcatggccttctacaaggacagacacaatatgca
gttaatcaggttcctgtaccagcagctaatattgaacaacaagttgttgtcaataaaaag
cttcaggcttatggcttacacttgcatttccagagtgtacttccaattgccatggataga
gccgttaaagaaatagtgtccagcattgtgcaacgtagtgtttctattgcgactcagaca
actaaggaacttgtcttgaaggactatgccatggagcccgatgagacccttacacgaaat
gcggcacatttgatggtggcaaggttggcaggaagtcttgctcatgtaacctgcaaggaa
cctttacgtggttcaatatcaacccagctcagaaactcacttcagggctttaacatatca
actgatctatcagaacaagcagttcaactggtgactaatgataatcttgacctaggctgt
gtgttgattgagcaagctgcaactgataaggcggttcagagcattgatggggacatagct
caacaactttctatcaggagaaagcatagagaaagtgttggtgccagtttttttgatgct
agtctttatgcacaaggtcaaatgagcattttaccagaagccctccgtcctaaaccaggc
cagctgtcacactcacagcagcgagtttatgaggattttgctcggtttccaggacagaat
cggtccacccagagctcaaatactgctccagttggcctctctgcttcatcaggaggtggt
ggtttgtccaggcaatttgcatctacatctggccaaatcagtggcagtatatactcgccc
ggccttattagcactggtattggtgctgtgccccagacattggatatgggctctgatgag
atagaaccttttggatcccaggttcctacaagtcttccttcagcacatatttcagttggt
gatggtcctcaaactcctgaaaatgacaccattccttcattccctcctgtctcgactact
gatgtgcaagtgatggaaccttctagctctgcaaaagaacctggaaatgctgcacaacct
actaatgcaactctgtcttccgagcgtcctggaactaatgtcacagagcctttgataacc
actggggatgcattggaaaagtaccagactatctcagagaagctagaaaatcagttggct
aatgaagcgaaagaggttgagattcaggcagttattgccgaagttcctgcagtcatcctt
aggtgcatcagccgagatgaggcagccttggctgtcgcccagaaggctttcaagggcttg
tatgaaaatgcatcaaattgtgctcatgttgatgctcacctggcaatcctggcggctata
cgtgatgtcagcaagcttgtggttaaggagctcactagttgggttttatactctgaggag
gataggaagttcaatagagatatcactataggtcttattaacagcgagttattaaacctt
ggggagtataatgttcacatggcaaagctacttgatgctgggagaaacaaggctgcaact
gaatttgccatttctctcatacaaactttggttatgaacgattctaaagtgatatcggag
cttcacaaccttgtagatgctctggctaagcttgctgcaagacctggatccccggaatca
ttacaacagctgattgaaatagctaagaacccagctaatgctggaaatttgttgcctttg
gctgttggtaaagaagaaattgcacgaacccctaggggggataaaaagaccactgttcct
ggaacaagcagggaagaattcagtgtgacagatttggtggattttgatcctgctgggttc
tctgaacaggtatccgcattatttactgaatggtaccaaatatgcgaactgcccggagca
aatgatgcagcttgtgctcgccatgtttcactcttgcaacagagagggcttcttaaagga
gatgagatgacggatcggtttttccgcaggattatggaactctctgtatcacattgttta
tcatcggagactctttcatttctcgctattgatatatatgcgaagttagttttctcggtt
ctgaagtttttccctgcggatcagggttccagtaaactttcacttctgcccaaggttctt
gctgttacggttaaatttattctaaaagatgctgaggagagaaaggcgtcatttaatcca
aggccctactttaggttgtttgttaattggctgcttgatttgtgttcattggatcctgtg
tttgatggtgcaaattttcaggtattgactggtctggcaaatgccttccatgcaatccag
cctctaaaggtcccagggttcagctttgcatggcttgagttggtaagtcatagaagtttt
atgccaaagttgctcactgcaaatgcacaaaaaggatggccatatttccagagattactg
gtggacttgttccagttcatggagccattcctgaggaaagttcaacttggggaaccggtg
cattttctatacaaagggacgctccgagtgttgttggtgctacttcatgattttccagag
ttcctttgtgattatcatttcagcttttgtgatgtcataccccccagctgcatacaaatg
cgaaatataatccttagtgcatttcctcgcaatatgaggcttccagatccttctactccc
aacttaaagattgaccttctgcctgagattactcaatcaccgagaattctttcggaggtt
gatgccgcacttaaagcaaagcagatcaagaacgaagtggatgagtatcttaagactagg
caacaaggatctgcatttctcactgagttgaagcagaagcttcttctctctccaaatgat
gttgaacgcgctgggactcgttacaatgttcctctaattaattcccttgttctttatgtt
gggatgcaggctcagcaactgcaagcgggtcatgctcaaagcatggctaatatgagtgca
ttcttagtgagtgctgctctggatatttttcagacgttgataatggatcttgatacagag
ggccgatacctcttccttaatgctgttgccaatcaattgcgttatccaaacaatcacacc
cattacttctccttcattcttctttatctgtttcatgaatcaaaccaggaaacgatccag
gagcagatcactagagtattattagaacgtttgattgtcaataggcctcatccatggggt
cttctgattacttttattgagctgatcaagaatccgaggtacagcttctggagtaggtcg
tttacgaggtgtgcctctgagattgaaaagttgttcgaatcagtatcaaggtcttttgga
ggccccaaacctgttgatgatagtcttgtatctgccgggatacccgacaatcttcattaa
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integrated database retrieval system
