Salvia splendens (scarlet sage): 121790681
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Entry
121790681 CDS
T07627
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121790681
09123 Folding, sorting and degradation
03018 RNA degradation
121790681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121790681
03041 Spliceosome [BR:
sspl03041
]
121790681
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121790681
mRNA degradation factors
5'-3' decay
Lsm complex
121790681
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121790681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
121790681
NCBI-ProteinID:
XP_042044762
LinkDB
All DBs
Position
Unknown
AA seq
137 aa
AA seq
DB search
MFICLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRV
PDEVIDKVQEETKSRSDRRPPGVGRGRGRGGREEGPKPKGVGRGLEDGGGRGAGAARGRG
GVGGRAAGNRGGGRGGR
NT seq
414 nt
NT seq
+upstream
nt +downstream
nt
atgtttatttgtttggtggaactgaaaaatggggagacatacaatggtcacttggttaac
tgcgacacttggatgaacatccatctccgtgaagttatctgtacctcaaaggacggagat
aggttttggaggatgccagagtgctatgttaggggcaacacaatcaagtatctcagagtt
ccggatgaggtgattgataaagttcaagaagagacaaaaagccgttctgacagaaggcca
cctggagtagggcgtggaagaggaagaggtgggagagaagaaggccctaaaccaaaaggt
gtgggccgtggtttggaggatggaggaggccggggtgcaggtgctgctcgaggcaggggt
ggagttggaggaagagctgctggaaacagaggcggtggtcgaggaggccgatga
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integrated database retrieval system
