Salvia splendens (scarlet sage): 121801990
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Entry
121801990 CDS
T07627
Name
(RefSeq) serine/arginine-rich splicing factor SR34A-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121801990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121801990
Spliceosome [BR:
sspl03041
]
Common components
Common spliceosomal components
SR proteins
121801990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RRM_YTH1
RRM_3
Motif
Other DBs
NCBI-GeneID:
121801990
NCBI-ProteinID:
XP_042057423
LinkDB
All DBs
Position
5:complement(42789945..42794937)
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AA seq
269 aa
AA seq
DB search
MSGRFSRTIYVGNLPADIRESEVEDIFYKYGRILDIELKSPPRPPCYCFVEFENARDAED
AIRGRDGYSFDGCRLRVELAHGGRGPSSSSDRRGGGYSERGGGGGGGGGGGSGGGRFGVS
RHSDYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGLVDYTNYEDMKYAMR
KLDDSEFKNPWTRTYIRVKEYKGSPSRSRSRSRSRSRSPRRRSRSLPRSASRSPSASPVK
PSRPRSRSRSRSRSKSRSASPLPARSGSA
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgagtggccgattctctcgcaccatctatgttggaaacctccctgctgatatcagggaa
tcagaagtcgaggacatattttataagtatggtcgcatcttggatattgaactgaagagt
ccacctcgtccaccttgctattgtttcgttgagtttgagaatgctcgggatgctgaagat
gcgataaggggaagagatggctatagctttgatggctgccgtttgagggttgaacttgct
catggtggcagaggaccatcatcctctagtgatcgtcgtggtggtggttatagtgaaagg
ggaggtggaggtggtgggggaggcggaggtggcagcggtggtggcagatttggtgtgtcc
cgccattctgattatcgagtgattgtgcgtgggcttccttcttctgcttcttggcaagat
ttaaaggatcatatgcggaaagctggtgatgtgtgttttgctgaagtttcccgagatagt
gaaggaacgtacggcctagttgattatactaattatgaggacatgaaatatgctatgcgt
aagcttgatgatagtgagttcaaaaacccttggaccagaacttatatccgggtgaaggaa
tacaagggcagtccatcccgaagccgaagcaggagtcgcagcagaagcagaagcccgagg
aggagaagcaggtcactgccccgatcagcttcaagatcaccctcagcatcgcctgtcaaa
ccatctcgacccagatcgaggtccagatcaagatcaaggtccaaatcgaggtctgcatcc
ccacttccggcgaggtccggcagtgcctga
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