Salvia splendens (scarlet sage): 121809127
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Entry
121809127 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121809127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121809127
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121809127
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121809127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
121809127
NCBI-ProteinID:
XP_042065606
LinkDB
All DBs
Position
1:4282833..4301959
Genome browser
AA seq
2402 aa
AA seq
DB search
MVTFSSKLSGQIRFLLQDVNDSNSDSVFQELCNYAMHGMEASILLLQACFDHIDIYSRDL
KDMKLQPIFASIFKYLLDKPNFSSILSESLRSKAINEELLLNLSDALHLSVPEKIGVGLA
LSNSEDHDTRMCGKNFCMSQITELCANPVAFESSKLIHHILVFLSRSDGLSKHVDSFMQM
LFLVQPKDVAQFVIIPFLHDELLEDNFFRNSELLNEGGEEDFDAILAEMEKEISMADVMC
ELGYGCTANVALCKEMLSLFLPLTDATVAKILGMVARTYVGLDDSQNVFATFRSALGGNS
VLDMPSLNSWNVDVLVDSIKQLALGTNWINVMENLDHEGFYIPNEAAFSFFMSVYKHACQ
EPFPLHAICGSVWKNVEGQLSFLKYAVSAPPEVFTFAHSERQLSYDDAVPGHTLQSGPNC
AWSCHDLLVVLCQLSEMGHASLVRYVLESPLNNFPEVLLLGMAHVNTAYNLIQNEVASAV
LPMALKKASASGLLYTLWHVNRNLLLRGLIDSVNVDPDSVNRIFDACQEIKVLPQVLDMF
PFYLGIHLAVLASNREIMDLDSWLSARLVSSKDAFYEECIKFLKDVQIGDQDISPNHLHP
SGSLLNMYLEACPTVLKALQSHSGVLSSNHLSEEIEKLDVSHMRSNSRMRSAGGSDAAAD
SYADDIETEANAYFHQMFSGNLSIDAMIQMLTRFKESPEERKKSIYGCMIANLFEEYNFF
SKYPERQLRIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFSFGTRALEQFV
DRLIEWPQYCNHILQISHLRAAHSDLVEFIERALNRISAAHSEPDVGHSTTNDHHHGLVP
SSAPTMEAAGSPFSLIGPGSTQSVLPVSPSIPLPQRPPSSLDERKPSTTIFNHMKQSQSS
SAQPVTAPSSEMPTVQKSHSGAVLSVQSASPGFPRSSRSTSARFGSALNIETLVAAAERR
ETPVEVPASEAQDKISFIINNLSAANVEAKAKEFSEILNPQFYPWFAQYMVMKRASIETN
FHDLYLKFLDKVNLKPLFREIVQATYENCKVLVGSDLIKSSVEERSLLKNLGSWLGKITI
GKNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCSNSIAYQPPNPWTMAILGLL
AEIYAMPNLKMNLKFEIEVLFKHLSVDLKDVTPTSLLKEKVREVEGNPDFSNKDVGYSQP
PIMNEAKPGIISTLNHVEMPLDVAASPLPGGHSRIMSQQYAAPLHHSSGTLTEDEKLVSL
GFSDQLPSAQGLLQGQTQYAVNQVPVPAANIEQQVVVNKKLQAYGLHLHFQSVLPIAMDR
AVKEIVSSIVQRSVSIATQTTKELVLKDYAMEPDETLTRNAAHLMVARLAGSLAHVTCKE
PLRGSISTQLRNSLQGFNISTDLSEQAVQLVTNDNLDLGCVLIEQAATDKAVQSIDGDIA
QQLSIRRKHRDSVGASFFDASLYAPGQMSILPEALRPKPGQLSHSQQRVYEDFARFPGQN
RSTQSSNTAPVGLSASSGGGGLSRQFASTSGQISGSIYSPGLISTGIGAVPQTLEMGSDE
IEPFGSQVPTSLPSTHISVGDGPQTPENDTIPSLPPTSTTDVQVVEPSNSAKELGNAAQP
TNATLSSERPGTNVTEPLMTTGDALEKYQTISEKLENQLANEAKEVEIQAVIAEVPAVIL
RCISRDEAALAVAQKAFKGLYENASNCAHVDAHLAILAAIRDVSKLVVKELTSWVLYSEE
DRKFNRDITIGLIRSELLNLGEYNVHMAKLLDAGRNKAATEFAISLIQTLVMNDSKVISE
LHNLVDALAKLAARPGSPESLQQLIEIAKNPANAGNLSPLAVGKEEIARTPRDKKLLEQT
TVPGTSREEFNVTELVDFDPAGFSEQVSALFAEWYQICELPGANDAACARHVSLLQQRGL
LKGDEMTDRFFRRIMELSVSHCLSSESLSFLAIDMYAKLVFSVLKFFPADQGSSKLSLLP
KVLAVTVKFILKDAEERKASFNPRPYFRLFVNWLLDLCSLDPVFDGANFQVLTGLANAFH
AIQPLKVPGFSFAWLELVSHRSFMPKLLTANAQKGWPYFQRLLVDLFQFMEPFLRKVQLG
EPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDP
STPNLKIDLLPEITQSPRILSEVDAALKAKQIKNEVDEYLKTRQQGSAFLTELKQKLLLS
PNDVERAGTHYNVPLINSLVLYVGMQAQQLQAGHAQTMANISAFLVSAALDIFQTLIMDL
DTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFHESNQETIQEQITRVLLERLIVNRPH
PWGLLITFIELIKNPRYSFWSRSFTRCASEIEKLFESVSRSFGGPKPVDDSLVSAGIPDN
LH
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atggttacgttctcctccaagctttcgggccagattaggtttctgctgcaggacgttaac
gattccaactccgattcggttttccaagaactatgcaactatgcaatgcatggaatggag
gcgagcatattacttctgcaagcctgtttcgaccacatcgatatttattccagggatttg
aaggatatgaagctgcaaccgatatttgcttcaatattcaaatatttattggataaacct
aactttagttcaatattaagtgagtcactgcggtctaaagccatcaatgaagaactactt
ctgaatctttctgatgctttacacttgtcggtacctgagaaaattggagtagggcttgct
ttgtctaattctgaagatcatgataccaggatgtgcggaaagaatttctgcatgagtcag
atcacagagttgtgtgcaaatcctgttgcatttgagtcttctaagttaattcaccatatt
cttgtgtttctcagtcggtctgatggcctctctaagcacgtagattcattcatgcaaatg
ttatttcttgtgcaaccgaaggacgtggcccagtttgtcatcataccttttcttcatgat
gaactacttgaagataacttcttcagaaactcagagttgttgaatgaggggggtgaagag
gattttgatgccattctagcagaaatggagaaagaaattagcatggctgatgtaatgtgt
gagctaggatatgggtgtactgccaatgtggctctgtgcaaagaaatgttgtcgcttttc
ttaccgctcactgatgccacagttgcaaagattcttggaatggttgccagaacttatgta
ggtcttgatgacagccaaaatgtctttgctacattccgctctgcccttggtggtaacagt
gtcctagatatgccatctttgaattcttggaatgttgacgtccttgtggattcaatcaag
caacttgctctgggaactaactggattaatgtcatggagaatctggatcatgagggattt
tatatccccaatgaggctgctttttcatttttcatgtctgtctacaagcatgcatgccag
gaaccattccctctccatgctatttgtggatctgtttggaagaatgttgagggtcagcta
tcttttctaaaatatgcagtctctgcaccacctgaagtctttacgtttgctcattccgaa
aggcagctgtcctatgatgatgctgtgcctggacatacattgcagtctgggcctaattgt
gcttggtcatgtcatgacctgctggtggttctgtgtcagctatctgagatgggtcatgca
agtttagtgagatatgtccttgaatctcctcttaataacttcccagaagtactgcttctt
ggaatggcccatgttaatactgcgtataatcttatccaaaatgaggtcgcatccgctgtg
ctcccaatggctcttaaaaaggcttctgcaagtggtttattgtacactctgtggcatgtt
aatcgaaacttgttgctacgtggacttatagattccgtgaatgttgatccagacagtgtc
aataggatttttgatgcttgccaggaaataaaggttcttccacaagtactagatatgttt
cctttttaccttggcattcacttggctgtacttgcatctaatagagaaatcatggacctt
gatagctggttgagtgctcgattagtgtccagtaaagatgctttctatgaggaatgcatc
aagtttctgaaggatgttcagattggagatcaggacatctctcccaatcacttgcaccct
tctggttctcttttgaatatgtacttggaagcttgccccactgtcttaaaggcacttcag
tctcattctggtgtgctttcatctaatcacttgtctgaggaaattgaaaaattggatgtc
tctcatatgcgttctaattcaagaatgagaagtgctgggggttctgatgctgctgctgat
agttatgctgatgacattgaaacagaagcaaatgcatacttccatcaaatgttctctggt
aatctatctatcgatgctatgattcaaatgcttacccgcttcaaggaatctccagaagaa
aggaaaaagtcgatatacgggtgcatgattgctaatctatttgaggaatacaattttttc
tcgaagtaccctgaaaggcagctgaggattgcagcagtactttttggatcactcatcaag
catcaactagtgactcaccttacgctgggcattgctttacgagctgttttagatgcttta
aggaagcctgcagattcaaaaatgttctcctttgggaccagggcattggagcagtttgtg
gaccgtctcattgagtggccacagtactgcaatcatatcctgcaaatatctcatttgcgg
gctgctcattcagaccttgtagaattcatagagagggcacttaacaggatctcagctgct
catagtgaacctgatgttggccatagtacaactaatgatcaccatcatggtctcgttcca
tcttctgctccaactatggaggctgcaggctcgccattttctctaattggaccaggcagc
acacagtctgtattgcctgtttcaccttcaatcccactaccacagagaccaccgagttct
cttgatgaaaggaaaccctctacgactatctttaatcacatgaagcaatcacaatcgtct
tctgcgcaacctgttactgctccttcaagcgaaatgcctaccgttcagaagtcacacagc
ggtgctgttctgtcagtacaatctgcttcaccgggctttccacggtcttctagatcaacc
tcagcaagatttggctctgctttaaacattgagaccctcgttgctgctgctgagagaaga
gaaactcccgtagaggttccagcatcagaagctcaggacaagatatcttttattataaat
aacttgtctgctgcaaatgttgaggctaaagctaaagagtttagtgaaattctaaatcct
caattctatccgtggttcgcacagtatatggttatgaagagggcaagcattgaaacaaat
tttcatgatttgtacttgaagtttcttgataaagtaaatttgaaacctttgttcagagag
attgtacaggccacttatgaaaactgcaaggttcttgtcggatcagaccttataaagtct
agtgtggaagaacgatcactgctgaaaaatttaggaagctggcttgggaagattacaatc
ggcaaaaatcaagttctaagggcacgggagatagatccaaaatctttgattatagaggca
tatgaaaagggactcatgatagctgttattccttttacctcaaagattctggaaccctgt
tcgaacagtattgcatatcagcctcccaacccttggacaatggcgattcttggattgctt
gctgagatttatgcaatgccaaatttgaagatgaatcttaaatttgagattgaggtcctg
tttaagcatttaagtgtcgaccttaaggatgttacacctacttctcttctgaaggaaaaa
gtccgagaagttgaaggtaatcctgatttctctaataaggatgtcggatattcacaacca
ccaataatgaatgaggcgaaacctggaataatttcgacattaaaccatgttgagatgccc
cttgatgttgctgcctctccccttcctggtggacactctcgtataatgtctcagcagtat
gctgctccgctccatcattcatctggaactttaacggaggatgagaagctagttagcttg
gggttttctgaccagctgccttctgctcaaggccttctacaaggacagacacaatatgca
gttaatcaggttcctgtaccagcagctaatattgaacaacaagttgttgtcaataaaaag
cttcaggcttatggcttacacttgcatttccagagtgtacttccaattgccatggataga
gctgttaaagaaatagtgtccagtatcgtgcaacgtagtgtttctattgcgactcagaca
actaaggaacttgtcttgaaggattatgccatggagcccgatgagacccttacacgaaat
gcggcacatttgatggtggcaaggttggcgggaagtcttgctcatgtaacctgcaaggaa
cctttacgtggttcaatatcaacccagctcagaaactcacttcagggctttaacatatca
actgatctatcagaacaagcagttcaactggtgactaatgataatcttgacctaggctgt
gtgttgattgaacaagctgcaactgataaggctgttcagagcattgatggggacatagct
caacaactttctatcaggaggaagcatagagatagtgttggtgccagtttttttgatgct
agtctttatgcaccgggtcaaatgagcattttaccggaagcccttcgtcctaaaccaggc
cagctgtcacactcacagcagcgagtttatgaggattttgctcggtttcctggacagaat
cggtccacccagagctcaaatactgctccagttggcctctctgcttcatcaggaggtggt
ggtttgtccaggcaatttgcatctacatctggccaaatcagtggcagcatatactcgccc
ggccttattagcactggaataggtgctgtaccccagacattggaaatgggctctgatgag
atagaaccttttggatcccaggttcctacaagtcttccttcaacacatatttcagttggt
gatggtcctcaaactcctgaaaatgacaccattccttcattgcctcctacctcgactact
gatgtgcaagtggtggaaccttctaactctgcaaaagaacttggaaatgctgcacagcct
actaatgcaactctgtcttccgagcgtcctggaactaatgtcacagagcctttgatgacc
actggggatgcattggaaaagtaccagactatctcagagaagctagaaaatcagttggct
aatgaagcgaaagaggttgagattcaggcagttattgccgaagttcctgcagtcatcctt
aggtgcatcagccgagatgaggcagccttggctgtcgcccagaaggctttcaagggcttg
tatgaaaatgcatcaaattgtgctcatgttgatgctcacctggcaatcctggcggctata
cgtgatgtcagcaagcttgtggttaaggagctcactagctgggttttatactctgaggag
gataggaagttcaatagagatatcaccataggtcttattcgcagcgagttgttaaacctt
ggggagtataatgttcacatggcaaagcttcttgatgctgggagaaacaaggctgcaact
gaatttgccatttctctcatacaaactttggttatgaacgattctaaagtgatatcggag
cttcacaatcttgtagatgctctggcaaagcttgctgcaagacctggatccccggagtca
ttacaacagctgattgaaatagctaagaacccagctaatgctggaaatttgtctcctttg
gctgttggcaaagaagaaattgcacgaacccctagggataaaaagttgctggaacagacc
actgttcctggaacaagcagggaagaattcaatgtgacagaattggtggattttgatcct
gctggtttctctgaacaggtatccgcgttatttgctgaatggtaccaaatatgcgaactg
cccggagcaaatgatgcagcttgtgctcgccatgtttcactcttgcaacagagagggctt
cttaaaggagatgagatgacggaccggtttttccgcaggattatggaactctctgtttca
cattgtttatcatcggagtcactttcatttctcgctatcgatatgtatgcgaagttggtt
ttctcggttctgaagtttttccctgcggatcagggttccagtaaactttcacttctgccc
aaggttcttgctgttacggttaaatttattctaaaagatgctgaggagagaaaggcgtca
tttaatccaaggccctactttaggttgtttgttaattggctgcttgatttgtgttccttg
gatccagtatttgatggtgcaaattttcaggtattgactggtctggcaaatgccttccat
gcaattcagcctctaaaggtcccagggttcagctttgcatggcttgagttggtaagtcat
agaagttttatgccaaagttgctcactgcaaatgcacaaaaaggatggccatatttccag
agattactggtggacttgttccagttcatggagccattcctgaggaaagttcaacttggg
gaaccggtgcattttctatacaaagggacactccgagtgttgttggtgctactccatgat
tttccagagttcctttgtgattatcatttcagcttttgtgatgtcataccccccagctgc
atacaaatgcggaatataatccttagtgcatttcctcgcaatatgaggcttcctgatcct
tctactcctaacttaaagattgaccttctgcctgagattactcaatcaccgagaattctt
tcggaggttgatgccgcccttaaagcaaagcagatcaagaacgaagtggatgagtatctt
aagactaggcaacaaggatctgcatttctcactgagttgaaacagaagcttcttctctct
ccaaatgatgttgaacgcgctgggactcattacaatgttcctctaattaattcccttgtt
ctttatgttgggatgcaggctcagcaactgcaagcgggtcatgctcaaaccatggctaat
ataagtgcattcttagtgagtgctgctctggatatttttcagacgttgataatggatctt
gatacagagggccgatacctcttccttaatgctgttgccaaccaattgcgttatccaaac
aaccacacccattacttctccttcattcttctttatctgtttcatgaatcaaaccaggaa
acgatccaggagcagattaccagagtattattagaacgtttgattgttaataggcctcat
ccatggggtcttctgattacctttattgagctgataaagaatccgaggtacagcttctgg
agtaggtcgtttacgaggtgtgcctctgagatcgaaaagttgttcgaatcagtatcgagg
tcatttggaggccccaaacctgttgatgacagtcttgtatccgccgggatacccgacaat
cttcattaa
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integrated database retrieval system
