Solanum stenotomum: 125844787
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Entry
125844787 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125844787 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125844787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125844787
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125844787
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125844787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
125844787
NCBI-ProteinID:
XP_049380080
LinkDB
All DBs
Position
1:complement(17658642..17686378)
Genome browser
AA seq
2418 aa
AA seq
DB search
MIPFGSAASTQIRFLFQSLNGSNSDTVFHELRQYLAYGVEGSILLLRTCIDHLNVYGKDS
KNTQLDPAFASIFRCILDKPNLSTVFSESLKDTAISEEFLVNLSNAFHLAISEKIGVGLA
LSDSENVDVKKCGTNYCMGQIAELRSTNSSLDDAKQIQNVLLFLNQSEGLSKHVDLFVHL
LSLVQSKEAQFILTPLLSDELHEANFLRNLDFLNDDGEDDFDVLLADMEKEMSIADIMKE
LGYGCTASILQCKEMLSLFLPLTEVTVARILGMVVRTRSGIEDNLNMFSTFRTALGSISA
ADPSPLSSWNADVLIDAIKQLAPGLNWVTVLDNLDHEGFYIPDGAAFSFLMSIYKHACQD
PFPLGTICGSIWKNAEGQLSLLKYAVSVPPEVFTFAHSKRQLDCADAVNDHKIQNGHANH
AWLCLDLLEVLCQLAEIGYASSVRSILEHPLKHCPEVLLHGMAHINTAYNLLQHEVAAAA
FPVMLKNAAARGMILHLWHVNTSILCWGLVEALDVDLDNMHTVLDACQELKILSSVLDRI
PFAFGIRLAALASRKELLDLEKWLSNNLNTYKDTFYEACLKFLREIHLAALDDASNHFDP
PSALLTIYSETSSTFLKVLKSHSGLVSSRHLSEELDKLHITYMDANSRLKSVGGADSSTS
DGGGSDAIEAEANVYFHQMFSGQLSNDATVQMLARFKESTEKREQAIFECMIGNLFEEYK
FLSKYPDRQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGILALEQ
FVDRLIEWPQYCNHILQISHLRVANSELVAFIERALARISLTHSESEVGHSPAVDQFHGP
IPSSPMNSEGQTFQVVGQSGLQQSMQGPSSSQLPLRQQSSIEERKPSAALSGYLKPALSP
AVQPATVPSSDNAGIHKPQGPSSTSAVLTSSPGFLRPSRAITSGRFGSALNIETLVAAAE
RRETPIEAPASEIQDKISFIINNLSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIE
PNFHDLYLKFLDKANSKSLFKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKI
TIGKNHVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILE
LLAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVVPSSLLKDRVREVEGNPDFSNKDAGGS
SQPQMVADAKSGIISSLNQVELPLEVTSPHPSGPSRILTQYAAPLHLPSAPMTEDEKLAA
LGLSDQLPSAQGLLQGQSPFSVSQLPATASNIEQQVVVNPKLHALGLQLHFQSVLPIAMD
RAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTCK
EPLRGSISGQLRNLLQGLTIASDLLEQALQLVTNDNLDLGCAMIEQAATEKAIQTIDGEI
AQQLAIRRKQREGPGASFFDASPYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQ
NQSSQSSNAVTAVPSTSSSSVGVSRAYMSGTGQMNSNLYSSGLMNAVITAVPQPLEISEE
IDTSSQLNSASSPHLGIGDSVTSSSFETEATVEPFTSVSAPESHPVEPSSLAKESGASLQ
PSNATATSERVGNSISEPLLTTGDALDKYQIISEKLENLVSEEAEEAEIQALIAEVPVII
LKCISRDEAALAVAQKAFKGLYENATNSAHVGAHLAILSSIRDVSKLFVKELTSWVIYSD
EERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAVSLIQTLVISDSRVMS
ELQNLVDALAKIAARPGSPESLQQLVEIAKNPGANAAALSSVSFGKEDSNKQSRDKKIAV
TATGTREDYGVSECIEPDSASFREQVSMLFAEWYRICEIPGANDATHAHYILQLNQSGLL
KGDETSERFFRRLTELSVSHCLSSEVMTSTTQSHQAQPLSFLAIDIYAKLVFSILKFYPV
DQGSSKLLLLPKVLAVTVRFIQRDADEKKMIFNPRPYFRLFINWLVDLSSLDPVFDGANF
QVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQF
MEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPF
LSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAV
FLVGAALDVFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCG
GPKPVDENVVSGGISDIH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttcggctccgctgcttctactcagattcggtttttgttccagagtttgaac
ggttccaattctgacactgttttccatgagctccgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcggacctgcatcgatcatctgaatgtttatgggaaagactcg
aagaacacacagctggatcctgcatttgcttccattttcagatgcatcttggacaagcca
aatttgagcactgttttttctgaatccctcaaggacactgcaatcagtgaggagttttta
gtgaatctatcaaatgctttccacttggcaatatctgaaaaaattggagttggccttgca
ttgtcagactcagaaaatgttgatgtcaagaaatgtggaaccaactattgcatgggccag
attgcagagttacgttccaccaactcttctttagatgatgccaagcaaattcagaatgtt
cttttgtttctgaatcaatctgaaggcctctctaagcatgtagacttgtttgtgcatttg
ctatcactcgtccagtcaaaagaagcccagttcattttaactccattgctatctgacgaa
cttcatgaagctaattttttgaggaacttagatttcttaaatgacgacggtgaagatgat
tttgatgttcttttggcagatatggagaaagaaatgagtatagcagacataatgaaggaa
ttgggttatggatgcactgcttctatcttgcaatgcaaagaaatgttatccttatttttg
ccgctgactgaagtgactgttgctaggatacttggtatggttgtacgtacccgttcaggc
attgaggataaccttaacatgttctcaacgttccgtactgctcttggtagcatctctgca
gctgatccatcaccattgagttcctggaatgccgacgtccttattgatgcaattaagcaa
cttgctcctggacttaactgggtaactgttttagataacctagatcatgagggtttctat
attcccgacggggcagccttttcctttttgatgtccatttacaaacatgcctgtcaggat
ccttttcctcttggaactatttgtggttctatctggaagaatgctgagggtcagctttcc
ttactcaagtatgctgtgtcagtgcctcctgaagtatttaccttcgcacattctaagagg
caactggattgcgctgatgcggtgaatgaccataaaatccaaaatggacatgcaaatcac
gcatggttgtgtcttgaccttctcgaagttctttgccagctggctgagataggttatgca
agctctgtgcgatccatcctggagcaccctctgaagcactgtccagaagtcttgcttcat
gggatggcccacattaatactgcatataatctcctccagcatgaagttgccgctgctgct
tttcctgttatgctaaaaaatgctgctgctaggggtatgattcttcatttgtggcatgtt
aatactagcatcttgtgttggggtcttgtagaagcattggacgttgatctggacaacatg
cacacagttttggatgcctgtcaagagcttaagattctatcatcagtactagataggata
ccttttgctttcggcatcagacttgctgcccttgcttcccgcaaagaactcttggattta
gagaaatggttgagcaataacttaaacacatataaagataccttctatgaggcatgccta
aagttcttgagggaaatacatctcgctgccctagatgatgcttccaaccattttgatccc
cccagtgctcttttgactatttattcagaaacttcttctacctttttaaaggtccttaag
tctcattctggcttagtttcttcccgccacttatctgaggagctggacaagttgcacata
acatacatggatgctaattcaaggcttaaaagtgttggtggtgctgattcatccacttct
gatggtggtggttctgatgctattgaagcagaagcaaatgtatacttccatcaaatgttc
tctggtcagctgagtaatgatgcaacagttcaaatgcttgctcgtttcaaagaatcaact
gaaaagagggagcaagcaattttcgagtgcatgatcggtaatctgtttgaagaatacaaa
tttctctccaagtacccagacaggcagcttaaaattgcagctgttctatttgggtcactt
attaagaatcagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggat
gcattgcgcaagcctgctgattcaaagatgtttgtttttgggattttggcacttgaacag
ttcgttgatcgtctgattgaatggccccaatactgcaaccatatcttgcaaatatctcat
ctccgagtagctaattcagagcttgttgcattcattgaacgggcacttgctaggatatca
ctgacacattctgagtcagaggtaggccacagtcctgctgttgatcaattccatggtcct
atcccatcttccccaatgaattccgagggtcaaacatttcaagtggttggacagagtggt
ttgcagcaaagtatgcaaggaccctcttcaagccagcttcctctgaggcaacaaagctcc
atagaggagaggaaaccctctgctgctctctctggctacttgaagccagctttatcacct
gcagtgcaacctgccacagttccttcaagtgataatgctggcattcataagccacaaggt
ccaagcagtacttcagcagtactgacatcttctcctggttttcttcgcccatctagagcc
attacctcaggaaggtttggttctgcactgaatattgaaacacttgttgcagctgcagag
agaagagaaacacccatagaggctcctgcatcagaaatacaggataagatttcatttatt
atcaataacttatctgcggcaaatattgaggctaaagcaaaagagttcactgaaattttg
aaagagcagtactacccctggtttgctcagtatatggtgatgaaaagagcaagcattgaa
ccaaattttcatgacttgtacctgaagttcttagataaagccaattcaaaatctctgttc
aaggagattgtccaagcaacctacgagaactgcaaggttcttttagggtcagagttgata
aagtcaagttcagaagagcgttctttgctgaaaaaccttggaagctggctaggcaaaatc
acaattggaaagaatcatgtcttgagggcgcgggagattgatccgaagtctttgattatt
gaggcatatgaaaaaggtttgatgattgcagttattcctttcacatcgaagattctggaa
ccatgccaaagcagtctagcataccaaccacctaacccatggaccatgggcattcttgaa
ttacttgctgagatttatgcaatgccaaatcttaaaatgaacctcaagtttgacattgag
gtcctgttcaaaaatcttggtgtggatctaaaagaggtagttccaagttctcttcttaaa
gaccgagtgagagaagtggaaggaaatcccgacttctcaaacaaggatgctggtggatct
tcccaaccacagatggtggctgatgccaaatctggcattatatcttcactaaaccaggtt
gaactgccacttgaggttaccagtcctcatcctagtggcccttcacgaattttaactcag
tatgctgctccgcttcatcttccatctgctccaatgacggaggatgagaagcttgcagcg
cttggcctgtctgatcagcttccttctgctcaaggtcttttacaagggcaatcaccattc
tctgttagtcagcttcctgcaactgcatccaatatagagcagcaagttgttgtcaatcct
aagcttcatgctctgggcctgcagttgcattttcagagtgtacttcctattgctatggat
agagctatcaaagagatagtgtccagcattgtgcagcgcagtgtttctatagcaactcag
actacaaaggaacttgttttgaaggactatgccatggaatcggatgagacccggatacgt
aatgctgcacatttgatggtcgccagcctgtctggaagccttgctcatgtgacatgcaag
gaacctttacgtggttcaatatcaggccagcttcgtaatttacttcagggattgaccatt
gcaagtgacctccttgaacaagctcttcagcttgttactaatgacaatctcgatcttggc
tgtgccatgattgaacaagcagctacagagaaggctatacagactattgatggagaaata
gctcaacagctggccataaggaggaaacagagagagggccctggtgcctcattctttgat
gcaagcccttatacacaaggtcatatgggtgggttaccagaagctcttcgccctaaacct
ggccgcttatcccattctcagcaacgcgtttatgaggatttcgtccgcttaccttggcaa
aatcaatcaagccaaagctcaaatgctgtgactgctgttccttcaacttcttccagcagt
gttggtgtctccagggcgtatatgtcaggaactggacaaatgaactccaacctttactcg
tctggccttatgaatgcagtaataactgctgttccgcagccattggaaatatcagaagag
atagatacttcatctcaacttaatagtgcttcctctccccatcttgggataggtgatagt
gtcacttctagcagttttgaaacggaggctactgttgaaccattcacatcggtctcagct
cctgaatcgcatccagtggaaccatccagtcttgcaaaggaatcgggagcttccttacag
ccatcaaatgcaacagctacctctgaacgtgttggaaatagtatctctgagccgttgctg
actactggtgatgcgttggataagtaccagattatctctgaaaagcttgaaaacctggtg
agtgaagaagctgaagaggcagaaattcaggcacttattgctgaagttccggtaatcatc
ctcaaatgtattagtagagatgaggccgccttggcagttgcccagaaggctttcaaggga
ttgtatgagaatgctacaaatagtgcacatgttggtgcccatcttgctattctgtcttca
atccgtgatgttagcaagctttttgttaaggagctaactagttgggttatttactctgat
gaggagaggaagttcaacaaagacattacagttggtttgattcgtagtgaactgctaaac
cttgccgagtataatgtgcacatggctaaattacttgatgctggcagaaacaagtctgct
actgaatttgctgtatcgctaattcaaacactggtgataagtgattctagagtcatgtcc
gagctacagaaccttgttgatgcacttgctaagattgcagccagaccaggttctcccgag
tctttacaacaacttgttgagattgctaagaaccctggtgctaatgctgctgcgctgtct
agtgtatcttttgggaaggaggatagcaacaagcaatctagagacaaaaagattgccgtg
actgctactggtaccagagaagattatggagtttctgaatgtattgaaccagattctgca
agtttccgcgagcaggtctctatgttgtttgctgagtggtaccgtatttgtgaaattcct
ggggcgaatgatgcaactcatgctcattatatcttgcaattaaaccagagtggcctatta
aaaggcgatgaaacttcagagcgttttttccgcagactcacggaactttctgtttcacat
tgtctttcgtctgaggtcatgacttccacaactcagtctcaccaagcacaaccactatca
ttccttgcaatcgatatctatgccaaattagtgttctcaattttgaagttttatcctgtg
gatcaaggatctagtaaattattgctgctgccaaaggttctcgctgtcactgtaagattc
atccagagggacgctgatgaaaagaagatgatctttaatcctagaccatattttaggctt
ttcattaattggttagtggatctcagttccctggaccctgtttttgatggtgcaaatttt
caggttttaacagctttagccaatgctttccatgctcttcagcccctcaaagttccagga
ttcagctttgcatggcttgaacttgtaagtcaccgaagttttatgcctaaactacttgct
ggaaatgctcagaaggggtggccttactttcaacgactattggtggatctcttccagttt
atggagccctttctgaggaatgctgagctaggagaaccggttcagtttctgtataaaggg
actctcagggttttgttggttctcctccatgattttccggagttcctctgtgactaccat
ttcagcttctgtgatgttatccctccaagctgcatacagatgcgaaatataattttaagt
gcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgatcta
ctcgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaatca
aagcagatgaagggtgatgtagatgaatacctgaagacaaggcaacaggggtctccattt
ttgagtgaattgaagcagaagttactgctctctccaagtgaagccgccaaggctggaacg
cgctacaatgtacccctgatcaactcccttgtactctatgttggaatgcaggctatccag
cagctgcaggcaaaaactcctcatgctcagtcgatgcccagtagtgttccatttgcagta
ttcttggttggtgctgctctagatgtattccagactttgataatggacttggacaccgag
gggcgttacttgtttttaaacgcagtcgctaaccaattgcgatacccaaataatcacaca
cattacttctcctttattctgctctacctatttgcggaatcaaatcaggagatgatccaa
gaacagataaccagggtcctattagaacgcctgattgtaaatcgacctcatccatggggt
cttctgatcacattcattgagctgataaagaatccaaggtacaatttttggagtcgacca
tttacaagatgtgccccagagattgagaagctgtttgaatccgtctcaagatcatgtggt
ggccctaaacctgtggatgagaacgtggtgtcaggtggaatatctgatatccattag
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integrated database retrieval system
