Solanum stenotomum: 125865165
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Entry
125865165 CDS
T08385
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125865165
03015 mRNA surveillance pathway
125865165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125865165
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125865165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
125865165
NCBI-ProteinID:
XP_049401310
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Position
5:complement(1608872..1614996)
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AA seq
392 aa
AA seq
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MAKPGRGRAASPSGSSSRSRSRSRSRSYTPSNSRSSSSRSPSRSRSRSRSISSSSSASRS
ASSRSPSRLPPSQRKSPAGVSKRGRSPPPPPESKKASPPPRKVSPIPESRVIHVDQLSRN
VNENHLKEIFGNFGEILHVQLAIDHVVNLPKGFAYVEFKTRIDAEKAQLHMDGAQIDGKV
VHARFTLPERKKAASPPRAAATSSRRDAPRTDNAPVDVEKDGPKRQQDLSPRRKPASPPR
RSPIGRRGSPRRGPDSPVRRRANSPFRRGSPPPQRRRPASPMRRRSPSPPLRRHRTPPRG
SPRRIRGSPVRRRSPLPPRRRSPRRARSPPRRSPIGRRSSRSPIRRPIRSRSRSISPRRG
RGPAARXWEVIILLFFSQSSQGTPQDFKESQS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaggtcgaggccgtgcggcttcaccttcaggctcgtcttctcgttctcgt
tcccgttcccggtctcgctcttacactccttcaaactctcgctcctcaagttcgcgttct
ccatctcgatctagatcccgctccagatcaatttcttcatcttcctctgcttcccgcagt
gcaagttctcgcagccctagtcgtctccctccttctcagcgaaaaagccctgctggagta
tctaagcgaggccgctctccgccaccaccaccagagtctaagaaagcttctccacctcct
aggaaagtatctcctatacctgagtcacgtgtgattcatgtggatcagctcagtaggaat
gtcaatgaaaaccatttgaaagaaatatttggtaattttggtgaaattctgcatgtgcag
ttggccattgatcatgttgttaatcttcccaaagggtttgcttatgttgagttcaagact
agaattgatgctgagaaagcccaactacacatggatggtgcacagattgatgggaaagta
gttcatgccaggtttaccctacctgagcgaaagaaggctgcctcacctccaagggctgct
gcaacttcctcaagaagagatgctccaagaactgataatgcccctgttgatgtggagaaa
gatggaccaaaacggcaacaagacttatctcctcgtcgaaaacctgcctctccacctcgg
aggtctcctataggacgaagaggatctcctagacgtgggccagattctccagttcgccgt
cgagcaaattctccttttaggcgcggcagtccacctccccagaggaggaggcctgcatct
cccatgagacgccgttcaccatcacctccactaagacgtcatcggacacctcctaggggc
tctcccagaagaattcgtggcagtcctgttcgaagacgttctccccttccaccaaggcga
cgttctccacgacgtgctagaagtccacccagaagatctccgattggtcgtcggtctagc
cgttctcctattagaaggcctatccggtcacgatcaagatccatctctcctaggcgggga
aggggtccagctgcaagancgtgggaggtcatcatcctactcttcttctcccagtcctcg
caagggaccccgcaagatttcaaagagtcgcagtcctaa
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