Solanum stenotomum: 125871815
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Entry
125871815 CDS
T08385
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sstn
Solanum stenotomum
Pathway
sstn00040
Pentose and glucuronate interconversions
sstn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125871815
Enzymes [BR:
sstn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125871815
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
VasX_N
Motif
Other DBs
NCBI-GeneID:
125871815
NCBI-ProteinID:
XP_049408449
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Position
7:52914244..52919436
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AA seq
488 aa
AA seq
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MFQRSYIVIFLILTSFFPFAFGIFLNVTTLPGQHPDPEAVALEVNRKVNASLSIFQSRRK
MLSYTSSDQSSCQTGNPIDDCWRCDHSWQLNRQRLADCAIGFGQYALGGKGGRYYVVTSS
SDPDPVNPPPGTLRYGVIQEEPLWIVFSANMEIKLSEELIFNSHKTLDGRGVNVHITGGG
CITLQYISNVIIHNIHVHHCYESGYTNVRSSPTHFGYRGKSDGDGISIFGSRDIWIDHCS
LSNCKDGLIDVVMGSTGITISNNHFSHHNEVMLLGHSDDYLPDSGMQVTISFNHFGKKLI
QRMPRCRRGYIHVVNNDFTRWEMYAIGGSGSPTINSQGNRYIAPFDPFAKEVTKRVDTDE
GKWRNWNWRSEGDVMANGAYFVASGEEVEVKYEKAYSVEPKSADFIDQITLNAGVLIHRG
SNSGKWTAATNNDTESAGDDGGGEDLVAISGDSDDDYGGDEESRSSTIYSNFSLLFNFLM
TLLALLWS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaagaagctacattgtgattttcttgattttaacttcattttttccatttgct
tttgggattttcttgaatgtcactactctccctggtcagcatcctgatcctgaagctgtt
gctcttgaagttaataggaaagtgaatgcatcactctcaattttccaatcaagaagaaaa
atgttgtcttacacaagtagtgaccaatcctcttgtcaaacgggcaaccctatcgatgat
tgttggcgatgtgaccatagttggcaattaaatcgccaaagactagccgattgcgccatc
ggtttcggtcaatacgccctcggtgggaaaggcggtcgttactacgtggtcacctcatcc
tcggaccccgaccccgtgaacccgccacctggcactctccgatacggagtcatccaagag
gaaccgttatggatagtattctcagccaatatggagattaaactctcggaagagctcatt
ttcaactcgcacaaaaccctagacggacgtggggtcaacgtgcacataacgggagggggt
tgcataacgttacaatatatctccaacgttataatccacaacatacacgtacatcattgt
tacgaatcgggctatacgaacgtacgttcgagccctacacatttcggataccgaggcaag
tcggatggggatggaatctcgatattcgggtcacgagacatatggatagaccattgttca
ttgtccaattgtaaagatggattaattgatgtagttatggggtcaacggggataacgata
tcaaataatcatttttcacatcataatgaggtaatgttattgggacatagtgatgattat
ttgccagattcaggtatgcaagtcacaatatcatttaatcattttggtaaaaaattaatt
caaagaatgccaaggtgtagaagaggatatattcatgttgtcaataatgattttacaaga
tgggaaatgtatgcaattggtggaagtggaagtcctactatcaacagccaaggaaataga
tatattgcaccctttgacccttttgctaaagaggtaacaaaaagagtggacacagatgaa
ggaaaatggagaaattggaattggagaagtgaaggggatgtaatggcaaatggagcatac
tttgtggcctctggtgaagaagttgaagttaaatatgaaaaagcttatagtgtggagccc
aaatctgctgattttattgaccaaattactttaaatgctggtgttcttattcacaggggc
agcaacagtggaaaatggactgctgccaccaacaatgacaccgaatccgccggagacgac
ggtggaggggaagatctcgtggcaatttccggcgactccgacgacgattatggtggtgat
gaagagtctagaagctctacaatttactctaatttctccttgttatttaattttctaatg
acattgttagccttattgtggtcttaa
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