Solanum stenotomum: 125874880
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Entry
125874880 CDS
T08385
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125874880
09123 Folding, sorting and degradation
03018 RNA degradation
125874880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125874880
03041 Spliceosome [BR:
sstn03041
]
125874880
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125874880
mRNA degradation factors
5'-3' decay
Lsm complex
125874880
Spliceosome [BR:
sstn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125874880
Complex C
U2 snRNP components
125874880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
125874880
NCBI-ProteinID:
XP_049411882
LinkDB
All DBs
Position
8:301630..305528
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDMVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTSVVDEDKYPHMRSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaag
aatgatttggctatccgaggcacactccattcagtcgatcagtatctcaacattaagctc
gaaaacacaagtgtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgc
ttcatcagaggatcagtggtgagatacgtccagttacctccagatggagtcgacatagag
cttcttcatgatgctacgaggagagaagctcgtggtggctaa
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