Sphingomonas suaedae: FPZ54_07085
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Entry
FPZ54_07085 CDS
T07976
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssua
Sphingomonas suaedae
Pathway
ssua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPZ54_07085 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssua03021
]
FPZ54_07085 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssua03400
]
FPZ54_07085 (rpoB)
Enzymes [BR:
ssua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPZ54_07085 (rpoB)
Transcription machinery [BR:
ssua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPZ54_07085 (rpoB)
DNA repair and recombination proteins [BR:
ssua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPZ54_07085 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
hSac2
B
Motif
Other DBs
NCBI-ProteinID:
QDX25808
UniProt:
A0A518REF3
LinkDB
All DBs
Position
1479728..1483882
Genome browser
AA seq
1384 aa
AA seq
DB search
MATKAIESGTAKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLR
SVFPIRDFAGTAELDFVTYELEPPKFDVEECRQRGITYAAPMRVTLRLIVFEVDPDTDAR
SVLDIKEQDVYMGDMPLMTGNGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNSEDILNHFYNTVTYVR
GPGGWQIPFAPENWRGAKPMFDIVDAKSGEVIFPAGQKISPRAANKAGKDGLETLLIPTE
EIFGRYSAFDLINESTGEIYIEAGDEVSAENLELLDKAGIERIELLDIDHISTGPWIRNT
LKADKAEEREQALSDIYRVMRPGEPPTLETAESLFGGLFFDPERYDLSAVGRVKLNMRLD
LDAEDTVTTLRTEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETP
YRKVVDGKVTKDVVYLSAMEEAKHTIAQASAEVDGEGRFTEDLISARQAGEFLMALPETV
TLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVAR
DSGAAIAAKRAGIVDQVDASRIVIRATGEVSAEESGVDIYTLMKFERSNQSTCINQRPLV
KVGEMVSAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSI
HIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVTGTVVDVRVFNRHGIDKDERAMAIERE
EIERLKKDSDDERNILNRATWSRLKEMLLGQTATGVPKGLKKGSVIDEDLLDSVDRHEWW
KFAVADDKVQGDLETVKGQYDEAVKRIKDKFEDRREKLERGDELPPGVLKMVKVFVAVKR
KLQPGDKMAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLG
WAARGLGAKIGDALDAWREANPNPEAGQPPEAVKDLLKTVYGDNYSDDIERRDTASIVEL
AQNVRAGVPMGTPVFDGAVEADVTAMLRLAGLDESGQVDLFDGRTGDMFDRKVTVGYKYV
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSHELDSDGEPIV
EPAE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaggcaatcgagagcggcactgcgaagcgccgcatccgcaaggtgttcggc
gacattcacgaagtggtgcagatgccgaacctgatcgaggttcagcgcgaatcctacgaa
cagttcctgcggagcgacccctcgatcggctatgtctccgggttggaaaagacgctgcgc
agcgtgttcccgatccgtgacttcgccggcactgccgagctcgacttcgtcacctacgaa
ctcgaaccgcccaagttcgacgtcgaggaatgccgtcagcgcggcatcacctatgccgcg
ccgatgcgcgtcacgctgcgcctcatcgtgttcgaggtcgatcccgataccgatgcccgc
tcggtcctcgatatcaaggagcaggacgtctatatgggcgacatgcccctgatgacgggc
aacggcaccttcttcatcaacggtaccgagcgcgtgatcgtctcgcagatgcaccgctcg
ccgggcgtgctgttcgaccatgaccgcggcaagacccatgcatcgggcaagtatctcttc
gccgcgcgcgtgatcccgtatcgcggctcgtggctcgacttcgagttcgacgccaaggac
atcgtcaacgtccgtatcgaccgcaagcgcaagctgccggtcacgacgctgctgtacgcg
ctgggcctgaacagcgaggacatcctcaaccacttctacaacaccgtgacctatgtgcgc
ggtccgggtggctggcagatcccgttcgcacccgagaactggcgcggcgccaagccgatg
ttcgacatcgtcgacgccaagtcgggcgaagtgatcttccccgcgggccagaagatcagc
ccgcgcgccgccaacaaggcgggcaaggacggcctcgagacgctgctgatcccgaccgag
gaaatcttcggccgctacagcgcgttcgacctgatcaacgagtcgaccggcgaaatctat
atcgaggcgggcgacgaagtgtcggccgagaatctcgagctgctggacaaggccgggatc
gagcgcatcgagctgctcgatatcgaccatatctcgaccggtccgtggatccgcaacaca
ctcaaggccgacaaggccgaggagcgcgagcaggcgctgtccgacatctatcgcgtcatg
cgccccggcgagccgccgacgctggagaccgcagagtcgctgttcggcggcctgttcttc
gatcccgagcgctacgacctgtcggccgtgggccgcgtgaagctgaacatgcgcctcgac
ctcgatgccgaggacacggtcaccaccctgcgcaccgaggacattctggcggtcgtcaag
acgctggtcgacctcaaggacggcaagggcgaagtcgacgacatcgacaatctcggcaac
cgtcgcgtgcgttcggtgggcgagctgctcgagaaccagtatcgcgtcggcctgctgcgc
atggagcgtgcggtcaaggagcgcatgtcgtcggtcgacgtgtcgacggtcatgccgaac
gacctgatcaacgccaagcccgcggtcgccgcggtgcgcgaattcttcggttcgtcgcag
ctgtcgcagttcatggaccagaccaacccgctctccgaagtgacgcacaagcgtcgcgtt
tcggcgcttggcccgggcggtctgacgcgtgagcgcgcgggcttcgaggttcgcgacgtt
cacccgacgcactatggccgtatctgtccgattgagacgccggaaggcccgaacatcggt
ctgatcaacagccttgcgaccttcagccgcgtcaacaaatatggcttcatcgagacgccc
taccgcaaggtggtagacggcaaggtgaccaaggacgtcgtctatctgtcggcgatggaa
gaagcgaagcacaccatcgcccaggcgtcggccgaggtggatggcgaaggccgcttcacc
gaggacctgatctcggcgcgtcaggcgggcgaattcctgatggcgctgcccgaaacggtg
acgctgatggacgtcagccccaagcagctggtgtcggtcgcggcctcgctgatcccgttc
cttgaaaatgacgacgccaaccgcgcgctcatgggttcgaacatgcagcgccaggcggtg
ccgctggtcaaggccgaggcgcccttcgtcggcaccggcatggaagagaccgtcgcgcgc
gattcgggcgcggcgatcgcggccaagcgcgccggcatcgtcgatcaggtcgatgcgtcg
cgcatcgtcatccgcgcaaccggcgaggtctcggcggaagagagcggcgtcgacatctat
acgctgatgaagttcgagcgttcgaaccagtcgacctgcatcaaccagcgtccgctggtg
aaggtgggcgaaatggtcagcgcgggcgacatcatcgccgatggcccgtcgaccgagttc
ggcgagctggcgctgggccgcaacgtgctcgtcgcgttcatgccgtggaacggctacaac
tatgaggactcgatcctgatcagcgagcggatcgtgaaggacgacgtgttcacgtcgatc
catatcgacgagttcgaggtgatggcccgcgacaccaagctggggccggaggacatcacc
cgcgacatccccaacgtcggcgaggaagcgctgcgcaacctcgacgaggcgggcatcgtg
tacatcggcgccgaggtcgagccgggcgacatcctggtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagagaagctgctccgcgcgatcttcggtgaaaaggccagc
gacgtgcgcgacacctcgctccgcctgccgccgggcgtcaccgggaccgtcgtcgacgtg
cgcgtcttcaaccgccacggcatcgacaaggacgagcgcgcgatggcgatcgagcgcgag
gagatcgagcgcctgaagaaggactcggacgacgagcgcaacatcctcaaccgtgctacc
tggtcgcgcctcaaggagatgctgctcggccagaccgcgaccggcgtgccgaagggcctg
aagaaggggtcggtgatcgacgaggatctgctcgacagcgtcgaccgccacgaatggtgg
aagttcgctgttgccgacgacaaggtccagggcgatctcgagaccgtcaagggtcagtat
gacgaggcggtcaagcgcatcaaggacaagttcgaggatcgccgcgagaagctggagcgc
ggcgacgagctgcccccgggcgtgctgaagatggtcaaggtgttcgtcgcggtgaagcgc
aagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcatcatcagccgc
atcctgccacaggaggacatgccgttcctcgaggacgggactccggtcgacttcgtgctt
aacccgctgggcgtgccgtcgcgcatgaacgtcgggcagatcttcgagacgcatctgggc
tgggccgcgcgcggcctgggcgccaagatcggcgatgcgctcgacgcatggcgcgaggcg
aacccgaaccccgaggccggccagccgcccgaggcggtgaaggacctgctcaagaccgtc
tatggcgacaactattccgacgatatcgaacgccgcgacaccgcgtcgatcgtcgagctg
gcgcagaatgtccgcgcaggcgttccgatgggcaccccggtgttcgacggcgcggtcgag
gcggacgtgacggcgatgctgcggctcgccgggctggacgagagcggccaggtcgatctg
ttcgacgggcgcaccggggacatgttcgatcgcaaggtcaccgtgggctacaaatatgtg
ctcaaactgcaccacctggtcgacgacaagatccacgcgcgttcgatcggcccgtacagc
ctcgtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggtgag
atggaggtctgggccctgcaggcgtacggcgctgcctatacgctgcaggaaatgctgacg
gtgaagtccgacgacgtggtcggccgcaccaaggtctatgaggcgatcgtcaagggtgac
gacacgttcgaggccggcatccccgagagcttcaacgtgctcgtcaaggaaatgcgctcg
ctgggcctcaacgtcgaactcaagagccacgagctcgactccgatggcgagccgatcgtc
gagcctgccgagtaa
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integrated database retrieval system
