Shinella sumterensis: Q9314_02480
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Entry
Q9314_02480 CDS
T09417
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssum
Shinella sumterensis
Pathway
ssum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q9314_02480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssum03021
]
Q9314_02480 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssum03400
]
Q9314_02480 (rpoB)
Enzymes [BR:
ssum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q9314_02480 (rpoB)
Transcription machinery [BR:
ssum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q9314_02480 (rpoB)
DNA repair and recombination proteins [BR:
ssum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q9314_02480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
hSac2
Motif
Other DBs
NCBI-ProteinID:
WLS08671
LinkDB
All DBs
Position
complement(476406..480545)
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQSVFK
SVFPITDFSGASMLEFVSYEFEQPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEDILSTFYTKSLYQR
DGEGWRIPFNPDVLKGQKAVADMIDADTGEVVVEVGKKLTPRLLRQLSEKGLKALKATDE
DLYGNYLAEDIVNYETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRST
LAADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNTLFFDAERYDLSAVGRVKMNMRLD
LDVADTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKVTTDVVYLSAMEEAKYHVAQANSVLEADNSFAEEFVVCRHAGEVMLAPRDQI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDVLNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVAVAGPKSFKKGTELSNAVISEYPRSQWW
MFAVEDEKVQGEIEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGDLLDEYRKTMDISDLKRELTEVYESEAKDEVAHFDDDALVKLAEQSRKG
VSIATPVFDGAHEPDVASMLERAGLNSSGQSVLYDGRTGEAFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIDPNAEAGQLPDAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgtttaacggtcgtaggcgcgtacgcaagttttttggaaaaatc
cccgaagtcgcagaaatgccgaacctcatcgaggttcagaaggcatcctacgaccagttt
ctgatggttgaagagcccgccggcggtcgtccggacgagggccttcagtcggttttcaag
tcggtcttcccgatcaccgatttctccggcgcttccatgctcgaattcgtctcctacgag
ttcgaacagccgaagttcgacgtcgaggaatgccgccagcgtgatctgacctatgcagcg
ccgctcaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggataccggcgcgaag
tccatcaaggacatcaaggaacagaacgtctacatgggcgacatgccgctcatgaccgac
aacggcacgttcatcgtcaacggcaccgagcgcgtcatcgtctcccagatgcaccgttcg
ccgggcgtgttcttcgatcacgacaagggcaagagccattcttccggcaagctgctcttc
gcagcccgcgtcatcccgtatcgcggttcctggctcgacatcgaattcgacgccaaggac
atcgtgcatgcgcgcatcgaccgccgccgcaagatccccgtcacttcgcttctcatggcg
ctgggcatggacggcgaagacatcctgtcgaccttctacacgaagtcgctctaccagcgc
gacggcgaaggctggcgcattccgttcaatcccgacgtgctgaagggccagaaggccgtc
gcggacatgatcgatgccgatacgggcgaagtggttgtcgaagtcggcaagaagctcacg
ccgcgcctgctccgccagctctccgaaaagggcctcaaggctctcaaggcgaccgacgag
gatctctacggcaactacctcgccgaagacatcgtcaactacgagacgggtgaaatctat
ctcgaagccggcgacgaaatcgacgagaagaccctgccggtcatcctgtcggccggtttc
gacgagattccggttctcgacatcgaccatatcaatgtcggcgcctacatccgctcgacg
ctcgcagccgacaagaacgagaaccgtcaggacgctctgttcgacatctaccgcgtcatg
cgtccgggcgagccgccgaccatggattcggccgaagccatgttcaacacgctgttcttc
gatgcggagcgttacgatctctccgccgtcggccgcgtgaagatgaacatgcgccttgac
ctcgacgtcgccgacacggtccgcacgctacgcaaggaagacatcctggccgtggtcaag
atgctggtcgaactgcgcgacggcaagggcgagatcgacgacatcgacaacctcggtaac
cgccgtgtgcgttcggtcggcgaactcatggagaaccagtaccgtctcggcctgctccgc
atggagcgcgcgatcaaggaacgcatgtcctcgatcgagatcgacacggtcatgccacag
gacctgatcaacgcgaagccggcggctgccgccgttcgtgagttcttcggttcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctgtcggaaattacccacaagcgccgtctt
tcggcgcttggcccgggtggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtt
cacccgacccactatggccgtatctgcccgatcgagacgccggaaggcccgaacatcggt
ctgatcaactcgcttgccaccttcgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaagatcgtggatggcaaggtgacgacggacgtggtctacctctccgccatggaa
gaggccaagtaccacgttgcccaggccaactccgtgctggaagccgacaactccttcgct
gaagagttcgtcgtctgccgtcacgccggcgaagtcatgctcgccccgcgcgaccagatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgcggcggcgctcatcccgttc
cttgagaacgacgacgccaaccgcgcgctcatgggttcgaacatgcagcgtcaggccgtt
ccgcttcttcgggcggaagcaccgttcgtcggcaccggcatggagccgatcgtggcccgt
gactcgggtgctgccatcgcggcccgccgcggcggtgtcgtcgaccaggtcgacgcgacc
cgtatcgttatccgcgccaccgaagacctcgatccgtcgaagtcgggcgtcgatatctat
cgtctgcagaagttccagcgctccaaccagaacacctgcgtcaaccagcgcccgctggtc
accgtcggcgacgttctcaacaagggcgacatcatcgcggacggtccgtcgaccgacctc
ggtgacctggcactcggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgatgtccgaacgcatcgtctccgacgacgtgttcacctcgatc
cacatcgaggaattcgaagtcatggcccgcgacacgaagctcggcccggaagaaatcacg
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtc
tatatcggtgcagaggttcagccgggcgacatcctggtcggcaagatcaccccgaagggc
gaaagcccgatgacgccggaagaaaagctcctgcgcgccatcttcggtgaaaaggcctcc
gacgttcgcgacacctccatgcgcatgccgcccggcaccttcggtacggtcgtcgaagtt
cgcgtcttcaaccgccacggcgtggagaaggacgagcgcgcgatggcgatcgagcgtgaa
gagatcgagcgtctggccaaggaccgtgacgacgagcaggcgatcctcgaccgtaacgtc
tacggccgtctgatcgacatgctgcgcggccacgtcgccgttgccggcccgaagtccttc
aagaagggcaccgagctgtcgaacgccgtcatctccgaatatccccgctcgcagtggtgg
atgttcgccgtcgaggacgagaaggtccagggcgagatcgaagcgcttcgtggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgagaaggtccagcgc
ggcgacgaaatgcctccgggcgtcatgaagatggtaaaggtcttcgtcgctgtgaagcgc
aagatccagcccggcgacaagatggccggccgtcacggcaacaagggtgtggtttcgcgc
atcctgccgatcgaggacatgccgttcctggaagacggtacgcatgtcgacatctgcttg
aacccgctgggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccaccttgcc
tgggcttgcgccggcatgggcaagaagatcggcgacctgctcgatgagtatcgcaagacg
atggacatctcggacctgaagcgcgagctgacggaagtctacgagagcgaagccaaggac
gaagtcgcccatttcgacgacgacgccctggtcaagcttgccgagcagtcccgcaagggt
gtctcgatcgcaacgccggtcttcgacggtgcgcatgaacccgacgtcgccagcatgctg
gagcgtgcaggcctcaactcctccggccagtcggttctctacgacggccgtacgggtgaa
gccttcgaccgcaaggtcaccgtcggctacatgtacatgatcaagctgaaccacctcgtg
gacgacaagatccacgcccgttcgatcggtccgtactcgctcgttacccagcagccgctg
ggcggcaaggcgcagttcggcggccagcgcttcggggaaatggaggtctgggcgctcgaa
gcttacggcgccgcctacacgctgcaggaaatgctgaccgtgaagtcggacgacgtcgcg
ggccgcaccaaggtgtacgaggcgatcgttcgcggcgacgacacgttcgaggcgggcatt
cccgagagcttcaacgttctcgtcaaggaaatgcgctcgctcggcctgtcggtcgaactc
gagaactccaagatcgatccgaacgcggaagccggccagcttcccgacgcggcagagtga
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integrated database retrieval system
