Saccharothrix syringae: EKG83_44045
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Entry
EKG83_44045 CDS
T06258
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssyi
Saccharothrix syringae
Pathway
ssyi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EKG83_44045 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssyi03021
]
EKG83_44045 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssyi03400
]
EKG83_44045 (rpoB)
Enzymes [BR:
ssyi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EKG83_44045 (rpoB)
Transcription machinery [BR:
ssyi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EKG83_44045 (rpoB)
DNA repair and recombination proteins [BR:
ssyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EKG83_44045 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RnfC_N
RsgI_N
Motif
Other DBs
NCBI-ProteinID:
QFZ23493
UniProt:
A0A5Q0HC56
LinkDB
All DBs
Position
complement(10420101..10423583)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAISRATKATAATNSTSGIPGAPKRVSFAKIHEPLQTPNLLDLQIQSFEWLTGDEAWFQR
RVDEGDEAPTGGLEEVLNEISPIEDFSGSMSLSFSDPRFDEVKASTEECKDKDMTYAAPL
FVTAEFTNHTTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDTAIDK
TTDKDVFSVKIIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSTEQIRERFA
FSETLLTTLEKDHTAGTDEALLDIYRKLRPGEPPTKESAQALLENLFFKDKRYDLAKVGR
YKVNKKLGLDIPITTGVLTEDDIVTTIEYLVRLHAGETTMQPGETEVPVEVDDIDHFGNR
RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
SQFMDQTNPLAGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGL
IGSLSSYGRVNPFGFIETPYRKVVDGRVTDQVDYLTADEEDRYVKAQANARIDDEGNFLE
DRVLVRKKGGEVEMIDPRDVDYMDVSPRQMVSAATAMIPFLEHDDANRALMGANMQRQAV
PLLRSESPLVGTGMELRAAVDAGDVVVAKKTGVVEEISADYVTVMADDGSRQTYGLHKFR
RSNQGTCINQKPIVNEGDRVQEGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDAII
LSQRLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGIIRIGAEV
QPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEYGKVIGIRVFSRE
DDDELPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPVEDMPFLEDGTPVDIV
LNTHGVPRRMNIGQVLETHLGWIAKQGWKIDGLPEWAQNLPEELYDVEPNTKTATPVFDG
AREDEITGLLGSTIPNRDGERMVKENGKAQLFDGRSGEPYPFPVSVGYMYILKLLHLVDD
KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDVLGR
VKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLERAA
ANLGINLSRSESPSVDDVVN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggcgatctctcgcgcgaccaaggccactgctgcgaccaactccacgtcggggatcccc
ggagcgccgaagcgagtctccttcgcgaagatccacgaaccgcttcagacgcccaacctg
ctcgacctgcagatccagtccttcgaatggctcaccggcgacgaggcgtggttccagcgc
cgcgtcgacgagggtgacgaggccccgaccggcggcctcgaggaggtcctgaacgagatc
tccccgatcgaggacttctccggctcgatgtcgctctccttctccgacccgcgcttcgac
gaggtcaaggcctcgaccgaggagtgcaaggacaaggacatgacgtacgcggccccgctg
ttcgtcacggcggagttcaccaaccacaccaccggcgagatcaagagccagacggtgttc
atgggtgacttcccgatgatgacggacaagggcacgttcatcatcaacggcaccgagcgg
gtcgtggtgtcccagctcgtccggtcgccgggtgtctacttcgacacggcgatcgacaag
acgaccgacaaggacgtcttcagcgtcaagatcatcccgtcccgcggcgcgtggctggag
ttcgacgtcgacaagcgcgacaccgtcggtgtccgcatcgaccgcaagcgccgccagccg
gtgaccgtgctgctgaaggcgctggggtggagcaccgagcagatccgcgagcgcttcgcg
ttctccgagacgctgctgaccaccctggagaaggaccacacggcgggcaccgacgaggcg
ctgctggacatctaccgcaagctgcgcccgggcgagccgccgacgaaggagtccgcgcag
gccctgctggagaacctgttcttcaaggacaagcgctacgacctcgccaaggtcggccgg
tacaaggtcaacaagaagctgggcctggacatcccgatcaccacgggtgtgctgaccgag
gacgacatcgtcaccacgatcgagtacctggtccgcctgcacgccggtgagacgacgatg
cagccgggcgagaccgaggtgcccgtcgaggtcgacgacatcgaccacttcggcaaccgc
cgcctgcgcaccgtcggcgagctgatccagaaccagatccgggtcggcctgtcccgcatg
gagcgcgtcgtgcgcgagcgcatgacgacccaggacgtcgaggcgatcacgccgcagacc
ctgatcaacatccgccccgtggtggcggcgatcaaggagttcttcggcacctcccagctc
tcgcagttcatggaccagacgaacccgctggccggcctgacccacaagcgccgcctgtcg
gcgctgggccccggcggcctgtcccgcgagcgggccggcatggaggtccgcgacgtccac
ccgtcgcactacggccgcatgtgcccgatcgagacgccggaaggcccgaacatcggcctg
atcggctcgctgtcctcctacgggcgggtcaacccgttcggcttcatcgagacgccgtac
cgcaaggtcgtcgacggccgggtcaccgaccaggtcgactacctgaccgcggacgaggag
gaccggtacgtcaaggcgcaggcgaacgcccgcatcgacgacgagggcaacttcctggag
gaccgcgtcctggtccgcaagaagggcggcgaggtcgagatgatcgacccgcgcgacgtc
gactacatggacgtctcgccgcggcagatggtctccgccgcgaccgccatgatccccttc
ctggagcacgacgacgccaaccgcgcgctgatgggcgcgaacatgcagcgccaggcggtg
ccgctgctgcgcagcgagtcgccgctggtcggcacgggcatggagctgcgcgccgcggtc
gacgccggtgacgtcgtggtggccaagaagaccggtgtggtcgaggagatctccgccgac
tacgtcacggtcatggccgacgacggctcgcggcagacctacggcctgcacaagttccgc
cgctcgaaccagggcacctgcatcaaccagaagcccatcgtcaacgagggcgaccgggtg
caggagggccaggtcctggccgacggaccgtgcaccgagaacggcgagatggcgctgggc
aagaacctgctcgtcgcgatcatgccgtgggagggccacaactacgaggacgcgatcatc
ctgtcgcagcgcctcgtgcaggacgacgtcctgacctcgatccacatcgaggagcacgag
atcgacgcgcgggacaccaagctgggcgccgaggagatcacccgggacatcccgaacgtc
tccgaggaggtcctggccgacctcgacgagcgcggcatcatccgcatcggcgccgaggtc
cagcccggcgacatcctggtcggcaaggtcaccccgaagggcgagaccgagctgaccccg
gaggagcgcctgctccgcgcgatcttcggcgagaaggcccgcgaggtgcgcgacacctcg
ctgaaggtgccgcacggcgagtacggcaaggtcatcggcatccgcgtgttcagccgcgag
gacgacgacgagctgccccccggcgtgaacgagctggtccgcgtctacgtggcccagaag
cgcaagatccaggacggcgacaagctcgccggccgccacggcaacaagggcgtcatcggc
aagatcctcccggtcgaggacatgccgttcctggaggacggcacgccggtcgacatcgtg
ctgaacacgcacggcgtcccccgtcgtatgaacatcggccaggtcctggagacccacctc
gggtggatcgccaagcagggctggaagatcgacggcctgccggagtgggcgcagaacctg
cccgaggagctgtacgacgtcgagccgaacacgaagaccgcgaccccggtcttcgacggc
gcgcgcgaggacgagatcacgggcctgctcggctcgacgatcccgaaccgcgacggcgag
cggatggtcaaggagaacggcaaggcgcagctcttcgacgggcgcagcggcgagccgtac
cccttcccggtgtcggtcggctacatgtacatcctgaagctgctgcacctggtcgacgac
aagatccacgcccgctcgaccggcccgtactcgatgatcacgcagcagccgctgggtggt
aaggcgcagttcggcggccagcgcttcggcgagatggagtgctgggcgatgcaggcgtac
ggcgccgcctacaccctgcaggagctgctgaccatcaagtccgacgacgtgctcggccgc
gtgaaggtctacgaggccatcgtcaagggcgagaacatcccggagccgggtatcccggag
tccttcaaggtgctgctcaaggagctgcagtcgctgtgcctcaacgtcgaggtgctgtcc
tcggacggcgccgcgatcgagatgcgcgacggcgacgacgaagacctggagcgcgcggcc
gcgaacctcggcatcaacctgtcgaggtccgagtcgccgtccgtggacgacgtcgtcaac
tag
DBGET
integrated database retrieval system
