Symphalangus syndactylus (siamang): 129457820
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Entry
129457820 CDS
T10134
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129457820 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129457820 (SKIC3)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129457820 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_8
TPR_17
TPR_16
TPR_14
TPR_11
TPR_CcmH_CycH
TPR_12
ANAPC3
ARM_TT21_C
TPR_9
ARM_TT21_2nd
Sel1
TPR_15
ARM_TT21_5th
Fis1_TPR_C
TPR_5
BTAD
Coatomer_E
DUF7017
TPR_30
Retrotran_gag_2
TPR_20
Motif
Other DBs
NCBI-GeneID:
129457820
NCBI-ProteinID:
XP_055089324
LinkDB
All DBs
Position
11:complement(82787249..82875998)
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
SAYKKAAELEPDQLLAWQGLANLYEKYNHINAKDDLPGVYQKLLDLYESVDKQKWCDVSK
KLVDLYYQEKKHLEVARTWHKLIKTRQEEGADNQELHQLWRKLTQFLAESTEDQNNETQQ
LLLTAFENALGLSDKIPSEDHQVLYRHFIQSLSKFPHETARLKKACEGMINIYPTVQYPL
EVLCLHLIESGNLTDEGQQYCCRLVEIDSKSGPGLIGLGIKALHDKKYEDAVRNLTEGLK
ESPVCTSGWYHLAEAQVKMHRPKEAILSCSQALKIIDNLGASGNSLYQRNLCLRLKAEAL
IKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKSSLDEATKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDTYMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMETALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQMIIK
KTEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYIEKALEYFTCALQHRADVSCLWKLA
GDACTCLYAVSPSKVNVHVLGVLLGQKEGKQVLKKNELLHLGGRCYGRALKLMSTANTWC
DLGINYYRQAQHLAETGSNMNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGI
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAEAVGSYDTMDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVVLNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYN
VAIRNYGRLLCSIGEYDKAIQAFKSTPLEELEDIIGFALALFMKGLYKESSKAYERALSI
VESEQDKAHILTALAITEYKQGKMDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
SKAALNELLKHIKHKDSNYQRCLLTSAIYALQGRSVAVQKQVSKAIHSNPGDPALWSLLS
RVVAQYAQRNAKGGVVAGIVAHILDSNHGKKALLYTAVNQLAMGSSSAEDEKNIALKTIQ
KAALLSPGDPAVWAGLMAACHADDKLALVNNTQPKRIDLYLALLSAVSASIKDKKFFENY
NQSLEKWSLSQAVTGLIDTGRISEAETLCTKNLKSNPDQPAIILLLRQVQCKPLLESQKP
LPDAVLEELQKTVMSNSTSVPAWQWLAHVYQSQGMMRAAEMCYRKSLQVASQQGSWSGKL
SSLLRLALLALKVCMANISNDHWPSLVQEATTEALKLCFCPLAVLLQALLQFKRKMGARE
TRRLLERVVYQPGYPKSIASTARWYLLRHLYAKDDYELIDVLVNNAKTHGDTRALELNQR
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggaagtgaagactgctctaaaaagtgctagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacactgtaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagctgaactagaacaacctgatcaggcccag
agtgcctataaaaaagctgccgaattagagccagaccaattactagcttggcaggggtta
gcaaacttgtatgagaaatataatcacataaatgctaaggatgacttacctggtgtttac
caaaagctcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtcagcaag
aaacttgtggatctatattaccaagaaaagaaacacctagaggtggctcgaacatggcac
aagttgataaaaacacggcaagaagaaggtgcagacaaccaggagcttcatcaactatgg
agaaaattgactcagttcctggctgaaagtacagaggaccagaataatgaaactcagcaa
ttgcttttaactgcttttgagaatgcactgggattatcagataagattcctagtgaagat
caccaagtactttataggcatttcattcagagtttatccaaatttcctcatgagactgct
agattgaagaaggcctgtgaaggaatgataaacatctatcctactgtacaatatccatta
gaagtgctttgtttgcatttaattgaatcaggaaatcttactgatgaggggcagcagtat
tgttgcagattagtggaaatagattcaaaaagtggtccaggcctcattggcttaggcatt
aaagcattacatgacaaaaagtatgaagatgctgttaggaacctaacagaagggttaaag
gaaagccctgtctgcacaagtggatggtaccatctggcagaagcccaagtcaaaatgcat
agacctaaagaagctattctttcatgcagtcaagctctgaagatcatagataatcttggt
gcgtctggtaacagtctttatcagaggaatctttgtcttcgtttgaaagcagaggctttg
attaaactctcagattatgactcttcagaggaagcaattcgtacgcttgatcagatttct
gatgcagataatatcccaggacttttggttctcaaaagcttggcctaccggaacaaaagt
tcattagacgaagctacaaagattatggaagaccttctctcttcttaccctgacctagct
gaagttcatgcccttgaggctttgattcatttcaccaaaaaggactatctacaagcagaa
aaatgttttcagagagctcttgagaaagataccgaagttgcagagtatcattaccaactt
ggattaacatactggttcatgggtgaagagacaagaaaagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatacatatatgggcaaagttttctgctatttaggt
cattattatagagatgtagtgggagataaaaacagagcccgtggatgttataggaaagcc
tttgaattagatgacactgatgctgaatctggagctgcagcggttgacttaagtgtggag
cttgaagatatggaaactgccttagctatcctaacaacagtaactcaaaaggcaagtgct
ggaacggcaaaatgggcctggcttaggcgaggactatactatttgaaagctggtcagcat
tctcaagcagtggctgatttacaggcagcattaagagcagacccaaaggacttcaattgt
tgggaatcattaggagaagcatacttaagcagaggaggctacacaacagccttgaagtcc
ttcacaaaagccagtgagctgaacccagaatccacatacagtgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaggaggctgtagctcaataccagatgatcattaaa
aagacagaagattatgtgcctgctttaaaaggtttgggtgaatgccatcttatgatggca
aaagcagctctagttgattatcttgatggaaaagccgtagactacatagaaaaagcactg
gaatattttacttgtgctctgcagcatcgagctgatgtgtcctgcctctggaagctagct
ggggatgcttgtacctgtctgtatgctgtctcaccatctaaagtgaatgttcatgtttta
ggagtccttctaggtcagaaagaaggaaaacaagtattaaagaaaaatgagctcctccac
cttggaggaaggtgttacggtcgtgcattaaaactgatgtctacagctaatacatggtgt
gaccttggaattaattattatcgccaagcacaacatctagcagaaacaggcagcaacatg
aatgatcttaaggagttgctggagaaatctttacattgtctgaaaaaagcagtgagactc
gacagtaataatcacttatactggaatgctcttggtgtggttgcatgttacagtggtatt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gctgttgcatggaccaacttgggagtgttatacctcacaaatgaaaatattgagcaagct
catgaagctttcaaaatggcccaatcccttgatccatcttatttaatgtgctggattgga
caagctcttattgctgaggcagttggaagttatgacaccatggatctcttcaggcacact
acagaactaaatatgcataccgaaggagcattaggttatgcttattgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctgtaccagtacaacatcctccagatgaat
gctattccagcagcacaagttgttttgaataaatatgtagaaagaattcagaattatgct
ccagctttcacaatgttgggttacttaaacgaacatctacaactgaaaaaggaagcagca
aatgcataccaaagggcaattttgttgttacagactgcagaagaccaagatacttacaat
gttgcaataagaaattacggcagattgttatgttccattggtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaagagttagaagacatcataggttttgcattggct
ttattcatgaaagggctttataaagagagcagcaaagcctatgagagagccttgtctatt
gttgaatcggagcaagacaaagcccatatcttgacagctctggcaataactgaatataaa
caaggaaaaatggatgtagccaagacattgctatttaaatgctctatcttaaaggaacca
accacagaaagccttcaagccctgtgtgctctagggttggcaatgcaggatgctacactg
tcaaaagcagcacttaatgagttactgaagcacatcaaacacaaagacagtaattatcag
aggtgccttcttacatcagcgatttatgcactccaaggccgcagtgtggcagtgcaaaaa
caagtatctaaagctattcacagcaaccctggtgaccctgctctttggtctctgttgtct
cgagttgttgcacagtatgctcaacgaaatgcaaagggaggtgttgtagcaggaattgtg
gctcatattctggactcaaatcacggaaagaaggcattactgtacactgcagtaaatcag
ttggctatgggaagcagttcagcagaagatgaaaaaaatattgcactaaagaccattcag
aaggcagctctcctttctccaggtgatcctgctgtctgggctgggctaatggcagcctgt
catgctgatgataaactggccttagtgaacaacactcagccaaagaggatagatttatac
ttggcactgttatctgctgtttctgcttcaattaaagacaaaaaattctttgaaaattac
aaccagtctcttgaaaagtggtctctctcacaagctgtcactggtctaatagacacagga
agaatatctgaagctgaaactctatgcacaaagaatctaaaaagtaaccctgatcagcca
gccattatcttacttttgagacaagttcagtgtaaaccactcctggagtcacaaaagcca
ctcccagatgctgtacttgaagaactacaaaaaacagtcatgtccaactcaacctctgtt
ccagcttggcagtggctggcacatgtgtatcagtcccaaggaatgatgagagctgcagag
atgtgttacagaaagagtctacaagtggcatcccaacagggcagttggagtgggaagctc
tcaagtctgttgagactagcactacttgcattaaaagtctgtatggctaacatttccaat
gatcactggccatctttggttcaagaggctacaactgaggccttgaagctttgcttttgt
ccactggctgttcttttacaagctttgttacaattcaaacgcaaaatgggggcaagagag
acacggcgtcttttggaaagagtagtatatcagcctgggtatcccaaatctattgcatca
actgcacgttggtacctactgagacacttatatgccaaagatgactatgagctgattgac
gtgctggtaaacaatgccaaaactcatggagatacaagagcattggaactgaatcagaga
ttgtcctcacaataa
DBGET
integrated database retrieval system
