Spirosoma taeanense: HNV11_12205
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Entry
HNV11_12205 CDS
T07080
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stae
Spirosoma taeanense
Pathway
stae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNV11_12205 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stae03021
]
HNV11_12205 (rho)
03019 Messenger RNA biogenesis [BR:
stae03019
]
HNV11_12205 (rho)
Transcription machinery [BR:
stae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HNV11_12205 (rho)
Messenger RNA biogenesis [BR:
stae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HNV11_12205 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
AAA_25
AAA_16
AAA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QJW90081
UniProt:
A0A6M5YA30
LinkDB
All DBs
Position
2906809..2909031
Genome browser
AA seq
740 aa
AA seq
DB search
MLTKEELDMKLLSELQPIAEQFGITNIAKYQKKELIYKILSEQAVNPQAEVVEEAAPVNE
APRRGRRTKAAQPEAETPAEPPVAPGPARTTEAPDSSRTRQRVRRDASAADTPPPTPEDG
MTATEGTPASETQPGTFPEDARPLRQPRANRERPAANAQATGTEQPQPEAASEAQRPETP
TQPVQPRPESDRMPGPRAERENGQPNRPDPNRQRGQRPEGNQPGPRDAANRPRQDANRND
NLRENGAMRRDARDGGPRNPRDQRPRTQRVVTDEVALNYVQPDEEFLTPTVVSDDNAPNM
QSDVNGTPSTDPGADTTDLSTETQPAQQSDQPQNGNGPAAQPQVPQPSREAQEYQNRIRR
QYNQHIREFDGIIDNEGVLEIMQDGGYGFLRSADYNYLASPDDIYVSPSQIKLFGLKTGD
TVRGAIRPPKEGEKYFALLRVSTVNGKTTEEIRDRIPFEYLTPLFPEEQLHLSNRPENYS
SRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAITKNHPEVYLIVLLIDERPEEVTD
MARSVNAEVISSTFDEQADRHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYNTVV
PSSGKILSGGVDANALHRPKRFFGAARNVENGGSLTIIATALIDTGSKMDEVIFEEFKGT
GNMELQLDRKLANKRVYPAVDVLASGTRREDLLLDKETLQRVWILRKHMADMNPMETMDF
LLDRMKGTRTNEEFLISMNR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaaaggaagaattagacatgaagcttctatcagagcttcagcccattgccgag
cagtttggcatcacgaacattgccaaataccagaagaaagaattaatttataagatattg
agtgaacaggccgtcaacccgcaggcagaagtcgttgaggaagcggctccggtgaacgaa
gcaccccgccggggtcggcggaccaaagccgcccaacccgaagcggaaacgcccgccgag
ccgccagttgctcctggcccggcccgcaccaccgaggcacccgacagcagccggacccgc
cagcgcgttcggcgcgacgccagtgccgccgatacccctccgccaaccccggaagacggc
atgacggccaccgaaggaacgcccgccagcgaaacccaacccggtaccttcccggaagat
gccaggccccttcgccagccccgcgccaaccgcgagcggccggctgcgaatgcacaggca
acgggtactgaacaaccgcaacccgaagccgcgtcggaggcccagcgccctgaaacaccc
acccagccggtgcagccccggcccgaaagcgaccggatgcccggcccacgtgcagaacgg
gaaaacggtcagcctaaccggcccgacccaaaccgccagcgcggccagcgccccgagggg
aatcagcccggcccccgcgacgcggccaaccgaccccgtcaggacgcgaaccgcaacgac
aacctgcgcgaaaacggcgccatgcgtcgcgatgcacgggatggcggcccccggaatccg
cgcgaccagcgtccccgtacccagcgggtggttaccgacgaagtggcgctaaattacgtc
cagcccgacgaagagtttctaacgcccacggttgtatccgacgacaacgccccgaacatg
cagtcggatgtcaacggaactccgtccaccgatccgggcgctgacaccaccgacctttcc
acggaaacgcagccagcgcagcagtctgaccagccacagaatggaaacggcccggcggct
cagccacaggttccgcagccgtcgcgggaggctcaggaataccagaaccgcatccgccgg
cagtacaaccagcacatccgcgagttcgatggtatcatcgacaacgaaggggtgctggag
atcatgcaggacggcggctacggcttcctgcgttcggccgattacaattacctggccagc
ccggacgatatttacgtatcgccctcgcagattaagctgttcggcctgaaaaccggcgat
acggtgcgcggagcgattcgtccgccgaaggaaggtgagaaatactttgccctgctgcgc
gtctcgaccgtcaacggcaaaacgaccgaagaaatccgcgaccggattccgttcgagtac
ctgactcccctcttccccgaagagcagctgcacctcagtaaccggcccgaaaattattcg
tcgcgggtactggacctgtttgccccgattggcaaaggccagcgcgggatgatcgtggcc
cagcccaaaacgggtaagaccgtgctgctgaaggaaatcgccaatgccatcaccaagaac
caccccgaggtgtatctgatcgtgctgctgatcgacgaacggccggaagaggtaacggac
atggcccgcagcgtaaatgccgaggtgatctcctccacgtttgatgagcaggccgaccgg
cacgtaaaggtgtcgagcatggtgctcgaaaaagccaagcggatggtggagtgcggccac
gatgtggtgatcctgctggattcgattacgcgtctggcgcgggcctacaacacggttgtg
ccttcgtcgggtaagattctgtcggggggtgtagacgccaacgccctgcaccggccgaag
cggttcttcggtgccgcccggaacgttgagaacggcggttcgctgaccatcatcgctaca
gccctgatcgacaccggctccaaaatggacgaagtgattttcgaagaattcaaaggcacc
ggcaacatggaactccagctcgaccgtaagctggccaacaagcgggtataccccgccgta
gacgttctggcgtcgggaacgcgccgggaagacctgctgctggataaggaaaccctgcag
cgcgtctggattctgcgcaagcatatggccgacatgaaccccatggaaaccatggacttc
ctgctcgaccgcatgaaaggaacgcgcaccaacgaagagtttctgatctcgatgaaccgc
taa
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