Streptomyces sp. BRB040: ABDE16_22880
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Entry
ABDE16_22880 CDS
T11010
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
stbr Streptomyces sp. BRB040
Pathway
stbr00040
Pentose and glucuronate interconversions
stbr01100
Metabolic pathways
stbr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
ABDE16_22880
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ABDE16_22880
Enzymes [BR:
stbr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
ABDE16_22880
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
F5_F8_type_C
Motif
Other DBs
NCBI-ProteinID:
XAR12505
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Position
5160033..5161592
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AA seq
519 aa
AA seq
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MRRPVALRLQAALGTLALAAAAGVVLTMPETASAAAGGATGYATQNGGTTGGAGGQTVRA
TTGTAIHQALCGRASSSTPIVIEVEGTINHGNTSKVSGDSCNTAADKIELKQVSNITIVG
VGSGAVFDQLGIHIRESSNIVIQNVTVRNVKKSGSPTSNGGDAIGMESDVRNVWVDHSTL
EASGGESEGYDGLFDMKDNTQYVTLSYSVLRNSGRGGLIGSSESDRSNGYVTFHHNLYEN
IDSRAPLLRGGVAHMYNNHYVSLNKSGINSRAGAKAKVDNNYFEDSKDVLGTFYTDEAGS
WQVSGNIFDNVTWSEPGGDNNPAGPDPQSNTTVSIPYSYTLDDASCVPSVVSGTAGANKG
LKVSDGSCTPQSPDPTDPTDPDPTDPDPTDPDPTDPPSGTNLSIGAGSDGSSKASGTSYG
NVRDGDMSTYWSPSGTTGSVSVKWSSARTVAKINIREASGSQGTIGSYRVLNHDTGAVLA
SGSGAGVIAFSPVSLEKITFEITGASGTPKVAEFETYAG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagacgaccagtcgcgctgcgactccaagcggcactgggcacgctggccctcgcggcc
gcggccggtgtggtgctgacgatgcccgagacggcgtcggcggcggccggcggcgccacc
ggctacgcgacccagaacggcggcacgaccggcggcgcgggcgggcagaccgtccgcgcc
accaccggcacggcgatccaccaggccctgtgcggccgtgccagcagcagtaccccgatc
gtcatcgaggtcgagggcaccatcaaccacggcaacaccagcaaggtgtcgggcgacagc
tgcaacaccgccgccgacaagatcgagctgaagcaggtcagcaacatcaccatcgtcggc
gtcggcagcggtgccgtcttcgaccaactgggcatccacatccgggagtccagcaacatc
gtcatccagaacgtgaccgtccggaacgtcaagaagtccggttcgcccacctccaacggc
ggcgacgccatcggcatggagagcgacgtccgcaacgtttgggtcgaccactccaccctg
gaggcctcgggcggcgagtcggagggctacgacggcctcttcgacatgaaggacaacacc
cagtacgtcaccctgtcctacagcgtcctgcgcaactccggccgcggcgggctcatcggc
tccagcgagagcgaccgctccaacggctacgtcaccttccaccacaacctgtacgagaac
atcgactcccgcgcgcccctcctgcgcggcggcgtcgcccacatgtacaacaaccactac
gtgagcctgaacaagtccgggatcaactcccgggcgggcgccaaggccaaggtcgacaac
aactacttcgaggactccaaggacgtcctcggcaccttctacaccgacgaggccggctcc
tggcaggtcagcggcaacatcttcgacaacgtgacctggtccgagcccggcggggacaac
aacccggccggccccgacccgcagtccaacaccacggtctccatcccgtactcctacacc
ctcgacgacgcctcctgcgtgccgtccgtcgtgagcggtacggcgggcgcgaacaagggc
ctgaaggtgtcggacggcagctgcacaccgcagagcccggacccgaccgaccccacggac
ccggacccgaccgacccggacccgacggacccggacccgacggatccgccgagcgggacc
aacctcagcatcggggccggctccgacggctcgtccaaggcgagcggcaccagctacggc
aacgtccgcgacggtgacatgagcacctactggtccccctccggcacgaccggctccgtc
tccgtcaagtggtcctccgcccggaccgtcgccaagatcaacatccgggaggcgtcgggc
tcccagggcaccatcggctcctaccgcgtcctcaaccacgacaccggtgccgtcctggcc
tccggcagcggcgcgggcgtgatcgccttctccccggtctcgctggagaagatcaccttc
gagatcaccggcgcctcgggcaccccgaaggtcgccgagttcgagacgtacgccggctga
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