Streptomyces sp. BRB040: ABDE16_24105
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Entry
ABDE16_24105 CDS
T11010
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stbr Streptomyces sp. BRB040
Pathway
stbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABDE16_24105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stbr03019
]
ABDE16_24105
03009 Ribosome biogenesis [BR:
stbr03009
]
ABDE16_24105
Enzymes [BR:
stbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABDE16_24105
Messenger RNA biogenesis [BR:
stbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABDE16_24105
Ribosome biogenesis [BR:
stbr03009
]
Prokaryotic type
rRNA processing factors
ABDE16_24105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
XAR12727
LinkDB
All DBs
Position
5435655..5439725
Genome browser
AA seq
1356 aa
AA seq
DB search
MLEPTEPTESSTTSTDSESNTPSDTLPPRRRRRAASRPAGPPSGGSEAPAETVAPAEPAP
AEAAEAPAPAPEAAAPARPRRRAVRRASAPAGAPAQAETAETVVPAAPAAETPAQAEEPA
GTVEAATEDAAPKGRTRRRATRSVTSAAETAAAVAPEPVAAPEPVEAPAAQETEAEAESA
APKGRTRRRATRRVSAPAEASAEATAEASEPEPAAAPEPAKAVKSTRAAKTTQAAESAAP
AASAETAESGDDAAPRRARRRSTRKAASGFAAPAQTAGASDEADAPKRPSRPAVAVFQAP
VFAEPQFQTPERAAAEAAAEAAGAEPVKPAEESAQAPEEQSAGSRRRRKRRGAAAEEAAE
ERATAAVTRSEPEAEPQAADEPEAEADASGDDHDDADGYEESGSRRRRRRGGRRRRRGDA
ADGDLTDGEVEHTAAEQADRADQDAADTAEQAEEDAEESEETSGESGGSSSSRRRRRRRR
RAGDGSGEGDSSADDPERTVVKVREPRPAREKSEPSDEVQSIKGSTRLEAKKQRRREGRE
QGRRRVPIITEAEFLARREAVERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGN
VYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQ
VTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKSILKKIVPEDAG
VIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKGGSAGAPTLLYGEPDMTVRVVRDIFN
EDFSKVVVSGDDAWQTIHGYVSHVAPDLAERLSKWTSEVDVFATYRIDEQLAKALDRKVW
LPSGGSLVIDRTEAMIVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGII
VIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSET
CVHCNGRGVIVHLDQPSAAGGGGGGKRRKRARAGADQPHEHEAVAGVETGLTPEQEADTE
SEAEVAAEVAEPVALPAPDFSADEELYSSAAEAEAAATRGRGRRRASRRASAPAGAPKAA
KGETAKAGTAKGETAGSETAKAEAVPAEVPTAQDVTVKDEVERPVRREPAAEVLAEPAAV
EDAVSGAPAPAPADSPAPASDEAAPKGRTRRRATRKVSAPAGSPEGAEAAVLTVPETVGT
VAPVAEQPAEPEQAPQAPAAAETAEATESAAPARPRRRAVRKPTTSTASEEAAVTVVPSA
AADAPEAEGAEEAAPAKKAAARKTAKKATAKKAATKKTAAKKTTTAKKATAKKAAKTTTA
KTTTAKKATAKKTASKKTAAAAQQAPSSVTAATDEG
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccaccgagtcgtcgaccacctcgacggactcagagtcgaac
acccccagcgacaccctgccgccgcgccgccggcgcagggccgcgtcccgcccggcgggt
ccgccgtccggtggatccgaggcgcccgcggagaccgtcgcgcccgccgagccggccccc
gccgaggcggccgaggcccccgcgccggctccggaggccgccgcccccgcccggccgcgg
cgtcgtgcggtacgccgtgcgtccgcgcccgccggggcgcccgcgcaggcggagacggcc
gagaccgtcgtgcccgcggcccccgccgccgagacgccggcgcaggccgaggagcctgcc
gggaccgtcgaggccgccaccgaggacgccgcgcccaaggggcgtacccggcgtcgcgcc
acgcgcagcgtgacctcggccgccgagactgccgccgccgtggcccccgagcccgtcgcg
gcccccgagcccgtcgaggcgcccgccgcgcaggagaccgaggccgaggccgagagcgcc
gcgccgaagggccggacccggcgtcgtgccacgcggcgggtgtccgccccggccgaggcg
tccgccgaggccaccgccgaagcgagcgagcccgagcccgcggcggcccccgagcccgcg
aaggccgtgaagagcacgagggcggcgaagaccacgcaggccgcggagtccgccgcgccc
gccgcgtcggccgagaccgcggagtccggcgacgacgccgccccgcgtcgtgcgcgccgc
cggtccacccgtaaggccgcctccgggttcgccgcccccgcgcagaccgccggggcgtcc
gacgaggcggacgcgcccaagcgtccgtcgcgtcccgcggtcgccgtgttccaggcgccc
gtgttcgccgagccccagttccagacgcccgagcgggccgcggccgaggccgccgccgag
gcggccggtgccgagccggtgaagccggccgaggagagcgcccaggcccctgaggagcag
tcggccggctcgcgccgccgccgcaagcgccggggtgccgccgccgaggaggccgccgag
gagcgggccaccgccgccgtcacgcgcagcgagcccgaggccgagccccaggccgccgac
gagcccgaggccgaggccgacgcgtcgggcgacgaccacgacgacgccgacggctacgag
gagtccggctcgcgccgtcgccgtcgccggggcggccgtcgccgccgccggggtgacgcc
gccgacggcgacctgacggacggcgaggtcgagcacaccgccgccgagcaggccgaccgg
gccgatcaggacgctgcggacaccgccgagcaggcggaggaggacgccgaggagagcgag
gagacctccggcgagagtggcgggtccagcagcagccggcgccgtcgtcgccgtcgccgc
cgggccggggacggctccggcgagggcgactcctccgccgacgaccccgagcgcaccgtc
gtcaaggtccgcgagccgcgccccgcgcgggagaagagcgagccgtccgacgaggtgcag
tccatcaagggctccacccgtctggaggccaagaagcagcgccgccgcgagggccgcgag
cagggccgccggcgtgtgccgatcatcaccgaggccgagttcctggcccgccgcgaggcc
gtcgagcgcgtcatggtcgtccgccagcacggcgagcgcacccagatcggcgtcctggag
gacggggtgctcgtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggcaac
gtctacctcggcaaggtgcagaacgtgctgccgtcgatggaggccgccttcatcgacatc
ggcaagggccgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcgctgggcatg
gccaacgggccgcgccgcatcgagtccgccctcaagtccggccagtcggtcctggtacag
gtcaccaaggacccgatcggtcacaagggcgcccgcctgaccagccaggtctcgctgccc
ggccgctacctggtctacgtgcccgagggctcgatgaccggcatcagccgcaagctgccc
gacaccgagcgttcccgcctgaagtcgatcctgaagaagatcgtccccgaggacgcgggc
gtcatcgtgcgcaccgccgccgagggcgccagcgaggacgagctgcgccgcgacgtcgag
cggctccaggcgcagtgggaggacatccagaagaaggccaagggcggcagcgccggcgcg
cccacgctgctgtacggcgagccggacatgaccgtccgggtcgtgcgggacatcttcaac
gaggacttctccaaggtcgtcgtcagcggcgacgacgcctggcagaccatccacggctac
gtgtcccacgtggcgccggacctcgccgagcggctgtccaagtggaccagcgaggtcgac
gtcttcgccacgtaccggatcgacgagcagctcgccaaggcgctggaccgcaaggtctgg
ctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatgatcgtcgtcgacgtc
aacaccggcaagttcaccggtcagggcggcaacctcgaggagacggtcaccaggaacaac
ctggaggcggccgaggagatcgtgcgccagctcaggctgcgcgacctcggcggcatcatc
gtcatcgacttcatcgacatggtgctcgagtccaaccgggacctggtgctgcggcgtctg
ctggagtgcctgggccgggaccggaccaagcaccaggtcgccgaggtgacctcgctgggc
ctggtccagatgacccgcaagcgggtcggccagggtctgctggagtcgttctcggagacc
tgcgtccactgcaacggccgcggtgtcatcgtccacctcgaccagccgtccgcggccggt
ggcggcggcggtggcaagcgccgcaagcgggcacgggccggggccgaccagccgcacgag
cacgaggccgtcgccggggtcgagaccgggctgacgccggagcaggaggcggacaccgag
tccgaggccgaggtcgccgccgaggtggccgagccggtcgccctcccggcgcccgacttc
agcgcggacgaggagctgtacagcagcgccgccgaggccgaggccgccgccacgcgcggt
cgcggccggcgccgcgcgagccgtcgggcgtccgccccggcgggtgcgcccaaggccgcc
aagggcgagacggcgaaggccgggaccgccaagggcgagacggccgggagcgagacggcg
aaggccgaggccgtgcctgccgaggtgcccaccgcgcaggacgtcacggtgaaggacgag
gtcgagcgtcccgtgcggcgcgagcccgccgccgaggtgctggccgagcccgcagccgtc
gaggacgccgtctccggcgccccggccccggctccggccgactccccggcgcccgcgtcg
gacgaggccgcgcccaagggccgtacccgccgccgggccacccggaaggtgtccgcaccg
gccggttcgcccgagggcgccgaggccgccgtactgacggtcccggagacggtcggcacg
gtggccccggtggccgagcagcccgccgagcccgagcaggcgccgcaggccccggccgcc
gcggagacggccgaggcgaccgagagcgcggccccggcccgtccgcggcgccgcgcggtg
cgcaagcccaccacgtccaccgcgtccgaggaggcggccgtcacggtcgtcccgtcggcc
gcggcggacgccccggaggcggagggcgccgaggaggcggccccggccaagaaggcggcg
gcccgcaagacggccaagaaggcgacggcgaagaaggccgccaccaagaagacagcggcc
aagaagacgacgaccgcgaagaaggccaccgccaagaaggcagccaagacgacgactgcc
aagacgacgaccgccaagaaggccacggccaagaagacggcgtcgaagaagaccgcggcg
gccgctcagcaggcaccgtcgtcggtcacggccgccaccgacgagggctga
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