Streptomyces sp. CA-256286: JHY03_42810
Help
Entry
JHY03_42810 CDS
T11337
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stcz Streptomyces sp. CA-256286
Pathway
stcz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stcz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JHY03_42810 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stcz03021
]
JHY03_42810 (rpoB)
03400 DNA repair and recombination proteins [BR:
stcz03400
]
JHY03_42810 (rpoB)
Enzymes [BR:
stcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JHY03_42810 (rpoB)
Transcription machinery [BR:
stcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JHY03_42810 (rpoB)
DNA repair and recombination proteins [BR:
stcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JHY03_42810 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QTA34085
LinkDB
All DBs
Position
4740757..4744242
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNAAWKARVEA
ALDSGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTFAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADEPLDAGVLTSDDVIATIKYLVKLHAGETETTGESGREIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFIETPYRKVVDGQVTDDVDYITADEEDRFVIAQANAILSDELRF
TEPRVLVRRRGGEVDYVPGTDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSEAPLVGTGMEYRCATDAGDVLKAEKDGVVQEVSADYITVTNDDGTYTTYRIAK
FMRSNQGTSVNQKVVVSEGDRVIAEQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLGDEWAKRLQSIGADQVPPGTNVATP
VFDGAREDEITGLFQATIPNRDGDRLVQPSGKAQLYDGRSGEPFPEPVSVGFMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgaccgcgaatacgaacaacggtgccagcaccgccccg
ctgcgcatctcttttgcaaagatcaaggagcccctcgaggttccgaacctcctcgcgctg
cagaccgagagctttgactggctcctcggtaacgccgcctggaaggctcgcgtcgaggct
gctctggacagtggacaggacgtccccaccaagtccggcctggaggagatcttcgaggag
atctcaccgatcgaggacttctccgggtcgatgtcgcttacgttccgcgaccaccgcttc
gagcccccgaagaactcgatcgacgagtgcaaggagcgcgacttcacgttcgccgcgccg
ctcttcgtcacggccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgatttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtcgtgtcgcagctggtccgctcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccttcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgtatcgaccgcaagcgcaagcag
tccgtcaccgtcctcctcaaggctctcggctggacgaccgagcagatcctcgaagagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgccccggcgagccgcccacccgcgaagccgct
cagacgctgctcgagaacctctacttcaacccgaagcgctacgacctcgcgaaggtcggc
cgctacaaggtgaacaagaagctcggcgccgatgagccgctggacgccggagtcctcacc
agcgacgacgtcatcgcgaccatcaagtacctggtcaagctgcacgccggtgagaccgag
acgaccggggagtcgggccgggagatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgtacgggcctggcg
cggatggagcgcgtcgtgcgtgagcgcatgacgacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggtaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctcacccacaagcgccgc
ctgtcggctcttggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccgtcccactacgggcgcatgtgtccgatcgagacccctgaaggcccgaacatc
ggcctgatcggttcgctcgcctcgtacggccgcgtcaacgcgttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgacggtcaggtcaccgacgacgtcgactacatcacggccgac
gaggaggaccgcttcgtcatcgcccaggcgaacgcgatcctctccgacgagctgcgcttc
accgagccccgcgtcctggtccgccgtcgtggcggagaggtcgactacgtgcccggcacg
gacgtcgactacatggacgtctcgccgcgccagatggtgtccgtcgccaccgcgatgatc
ccgttcctggagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgccag
gcggtgccgctcatcaagtccgaggccccgctcgtgggcaccggcatggagtaccgctgc
gccaccgacgccggtgacgtgctcaaggccgagaaggacggtgtggtccaggaggtctcc
gcggactacatcaccgtcacgaacgacgacggcacgtacaccacgtaccgcatcgccaag
ttcatgcgctccaaccagggcacctcggtgaaccagaaggtcgtcgtctccgagggcgac
cgggtcatcgctgagcaggtcctcgccgacggtccggccaccgagaacggtgagatggcc
ctcggcaagaacctcctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggcccggaggagatcacccgggacatcccg
aacgtctccgaagaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggtgcc
gaggtcgtcgccggtgacatcctcgtcggcaaggtcacgcccaagggcgagacggagctg
acccccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaagagggcgacgagctgccgccgggcgtgaaccagctggtccgcgtctacgtcgcg
cagaagcgcaagatcaccgatggtgacaagctcgccggccgtcacggcaacaagggtgtc
atctcgaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggcctcggtgacgagtgggcc
aagcgcctgcagtccatcggcgccgaccaggtccccccgggcaccaacgtcgccacgccc
gtcttcgacggtgcgcgcgaggacgagatcaccggcctcttccaggccacgatccccaac
cgcgacggcgaccgcctggtgcagccctccggcaaggcccagctctacgacggccgctcc
ggcgagccgttcccggagccggtctcggtcgggttcatgtacatcctcaagctccaccac
ctggtcgacgacaagctgcacgcgcgttcgaccggtccgtactccatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggacagcgcttcggtgagatggaggtgtgggcg
ctggaggcgtacggcgccgcgtacgcactccaggagctgctgacgatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccg
ggcatccccgagtccttcaaggtgctcatcaaggaaatgcagtcgctctgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacacggacgaggacgtcttc
cgcgcagcggaggagctcggtatcgacctgtcccggcgagagccgagcagcgtcgaagag
gtctga
DBGET
integrated database retrieval system
