Stenotrophomonas sp. KCTC 12332: AXG53_04545
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Entry
AXG53_04545 CDS
T04408
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
stek
Stenotrophomonas sp. KCTC 12332
Pathway
stek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG53_04545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stek03019
]
AXG53_04545
03400 DNA repair and recombination proteins [BR:
stek03400
]
AXG53_04545
Enzymes [BR:
stek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXG53_04545
Messenger RNA biogenesis [BR:
stek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXG53_04545
DNA repair and recombination proteins [BR:
stek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AXG53_04545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMJ58613
LinkDB
All DBs
Position
1039652..1041454
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AA seq
600 aa
AA seq
DB search
MPQSPAQQLLSSVFGYDSFRGDQQAIVEHVASGNDALVLMPTGGGKSLCYQIPALLRDGC
GIVISPLIALMQDQVEALHQVGVRAEFLNSTLDAETAARVERELLAGELQLLYVAPERLL
TGRFLSLLSRAHIGLFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQVPRIALTATADPP
TQREIAERLDLTTARHFVSSFDRPNIRYTVVQKDNAKRQLLGFLRNHRDEAGIVYCMSRR
KVEETAQFLCDEGMQALPYHAGMPAEVRAANQRRFLREDGIVMCATIAFGMGIDKPDVRF
VAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGEERKQLERA
KLDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPPAAWDATIPAQKALSCVYRS
GQRFGVGHLIDILRGSDNERIRQLGHEKLSTYAIGNDLDARAWRGVFRQLVAASLLEVDP
ESHGGLRLTDASRDVLTGRRQMMMRRDATPTRERERGGPRTGLPVQAGDLGLFQALRGLR
AELAREQNVPAFVIFHDSTLRNIAEQRPTSVEALGKVGGIGGSKLARYGQRLVEIVREQG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgccccagagtcccgcgcagcaactgctttccagcgttttcggttacgacagtttccgc
ggcgaccagcaggccattgtcgaacacgttgccagcggcaacgatgccctggtgctgatg
cctaccggcggcggcaagtcattgtgctatcagatcccggcgctgctgcgcgacggctgc
ggcatcgtcatctcgccgctgatcgccttgatgcaggatcaggtggaagccctgcaccag
gtcggcgtccgcgctgaattccttaattccacgctggatgccgaaaccgccgcgcgggtc
gagcgcgaactgctggccggcgagctgcaactgctgtacgtcgccccggagcggctgctc
accgggcgtttcctgtcactgctcagccgcgcgcacatcggcctgttcgccatcgacgaa
gcccactgcgtgtcgcaatggggccatgacttccgccccgagtaccggcagctgacggtg
ctgcacgagcgctggccgcaggtgccgcgtatcgccctgaccgccactgccgatccgccg
acccagcgcgaaatcgccgaacgcctggatctgaccacggcccggcatttcgtcagctcg
ttcgaccgccccaacatccgctacacggtggtacagaaggacaacgccaagcgccagttg
ctgggcttcctgcgcaaccaccgcgacgaggctggcatcgtctactgcatgtcgcggcgc
aaggttgaggagaccgcgcagttcctgtgcgacgaaggcatgcaggcactgccctaccac
gccggcatgccggcggaggtgcgtgccgccaaccagcgccgcttcctgcgcgaagacggc
atcgtgatgtgcgccaccatcgccttcggcatgggtatcgacaagccggacgtgcgcttt
gtcgcgcatacagacctgcccaagtcgatggaaggctattaccaggaaaccggccgtgcc
ggccgcgatggcgaggccgccgaggcctggctgtgctacggcctgggcgatgtggtgctg
ctcaagcaaatgatcgagcagtccgaggccggcgaagaacgcaagcagctggaacgcgcc
aagctcgatcacctgctcggctactgcgaatccatgcaatgccggcgccaggtgctgctg
gccggtttcggcgaaacctatcccaagccctgcggcaactgcgacaactgccttaccccg
cccgccgcctgggacgccaccattcccgcgcagaaggcattgagctgcgtctatcgcagt
ggccagcgtttcggtgtgggccatctgatcgacatcctgcgcggcagcgacaatgagcgc
atccgccagctcggccacgaaaaactcagcacctatgccatcggcaacgacctggatgca
cgcgcctggcgcggcgtgttccggcaactggtcgccgccagcctgctggaagtggacccg
gaaagccatggcgggctgcgcctgaccgatgccagccgcgacgtgctcaccggccgccgg
cagatgatgatgcgccgtgacgccaccccgacgcgtgagcgcgagcgcggcggcccgcgc
accggtctgccggtgcaggccggcgacctgggcctgttccaggcgctgcgcgggctgcgc
gcggaactggcacgcgagcagaacgtcccggccttcgtgatcttccacgacagcaccctg
cgcaacatcgccgagcagcgcccgaccagcgtcgaagcactgggcaaggtgggaggcatc
ggcggcagcaagctggcacgctatggccagcgcctggtcgagatcgtgcgcgagcagggc
tga
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