Stenotrophomonas sp. MYb57: CLM74_07165
Help
Entry
CLM74_07165 CDS
T05384
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
stem
Stenotrophomonas sp. MYb57
Pathway
stem03030
DNA replication
stem03430
Mismatch repair
stem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLM74_07165
03430 Mismatch repair
CLM74_07165
03440 Homologous recombination
CLM74_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stem03032
]
CLM74_07165
03400 DNA repair and recombination proteins [BR:
stem03400
]
CLM74_07165
Enzymes [BR:
stem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLM74_07165
DNA replication proteins [BR:
stem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLM74_07165
DNA repair and recombination proteins [BR:
stem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLM74_07165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AVJ32573
LinkDB
All DBs
Position
complement(1569940..1573518)
Genome browser
AA seq
1192 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIAEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPDWLKAGNANLFALAGRDSLAGRLALDGKHDLAEQQLADWQRVFGDGLHL
ELTRTGRDGEESFNQFALMAAGQRGLPVIASNDVRFLSPSDFSAHEARVCISTGRVLDDP
KRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPDYPVPDEET
LDSWIRSESRKGLAARLEKNPIAPGMTAQDYSDRLEFELDTIIKMGFPGYFLIVADFIQW
GKAQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVAKLIPNILGIS
LKDAMGEGKDSEMASPELIQRYQSEDDVRDLIDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEDGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRHERA
GIPPVDITQLPLDDAPTYKDIFASGNTGAVFQFESSGMRRLLKDAKPDRFEDLIALVSLY
RPGPMDLIPSFVDRKHGREDVEYPDPRTERILRDTYGIMVYQEQVMQMAQIVGGYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKDGVGEAKADAIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTEKVVGFLDEVRNLGLTVLPPKVNQSAFMFEA
STPDTIQYGLGAIKGVGQGACEAVVEERLRGGDYTDLLDFCTRIGSAKLNRRTLEAMINC
GALDELGHNRASLMLQLPEVIKATEQMARERASGQNSLFGGPEPGVQAIHLELQETDEWP
LLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGTDLGSVEKIWSANSNSGGGEKRWRPEV
QTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILVVKGGLRE
DEFNGGFALRIRQCWDFDEVCANYATRLSLRLDLRHQRPVWERIDALLDRHRPGRTPLRL
DLLLKGPDGGIAGMLDVSGQSAVRVDSKLMEALRAEPAVRTLKVRYSPPWAS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgcttcgtacatctccacgtccacaccgagttctcgctggcggactcc
accatccgcgtgccggccaagccggaccaggctgacccgaagaaggccaagcaggccaac
ctgctgtcgcgctcggtcgaactcggcctgcctgcgctggcggtgaccgacctcaacaac
ctgttcgccctggtcaagttctacaaggccgccgaaggcgtgggcatcaagcccatcgcc
ggcgccgacgtgatgatcgccgaagaaggccaggacccgtggcggatgaccctgctgtgc
cgcgaccgcgagggctacctgagcctgtcgcgtctgctgacccgggcatggatggaaggc
catcgccccgagggcggcgtggcggtgcatccggactggctgaaggccggcaacgccaac
ctgttcgccctggccggccgtgacagtctggccgggcgcctggccctggatggcaagcac
gatctggccgagcagcagctggccgactggcagcgcgtgttcggcgacggcctgcacctg
gagctgacccgcaccggccgcgatggcgaagagagcttcaaccagttcgcgctgatggcc
gccggccagcgtggcctgccggtgatcgccagcaacgacgtacgcttcctgtcaccgtcc
gatttcagcgcgcacgaagcccgcgtgtgcatctccaccggccgcgtgctggatgacccc
aagcgcccacgcgagtacagcgatcagcagtatctgaagtcggccgaagagatgtgcgcg
ctgttcgccgacatccccgatgcgatcgacaacacgctggcgctggccgagcgctgcaac
atcgagatgcgcctgggcacctacttcctgcccgactatccggtgcccgacgaggagacg
ctggacagctggatccgcagcgagtcgcgcaagggcctggcggcgcgcctggagaagaat
cccatcgcgcccggcatgaccgcgcaggattacagcgaccgcctcgagttcgagctggac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggcaaggcgcagggcattccgatcggcccgggccgtggttcgggtgcgggttcgctggtg
gcgtgggcactgcagatcaccgatctggacccgctgccgtacaacctgctgttcgagcgc
ttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtcatcgactacgttgcgcgcaaatatggccgcgagcgggtcagccagatc
atcacctacggcacgatggcggccaaggcggtggtgcgcgactccggccgcgtgctcggc
ttcccctacggcctggtcgacggcgtagccaagctgatcccgaacatcctcggcatctcg
ctcaaggatgcgatgggtgagggcaaggacagcgagatggcttcgcccgagctgatccag
cgctaccagagcgaggacgacgtccgcgacctgatcgacctggcacggcagctggaggac
ctgacccgcaacgccggcaagcacgccggtggcgtggtgatcgcgcccgagccgttgagc
gagttctgcccgctgttcgccgaacacgatgaagatggccgcggcaagaatccggtcacc
cagttcgacaagaacgacgttgaagaagtcggcctggtgaagttcgacttcctcggcctg
cgcacgctgacgatcatcgactgggcggtgaaggcgatcaacaagcgccacgagcgcgcc
ggcattccgccggtggacatcacccagctgccgctggacgatgcgcccacctacaaggac
atcttcgcctcgggcaataccggcgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctgaaggacgccaagcccgaccgtttcgaagacctgatcgcgctggtgtcgctgtac
cgacccggcccgatggacctgattccctccttcgtcgaccgcaagcacgggcgcgaagac
gtggagtatcccgatccgcgcaccgagcgcatcctgcgcgacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtcggcggctactcgctgggcggcgcc
gacctgctgcgccgtgcgatgggcaagaaggtgccggcggaaatggccaagcaccgcgag
atcttccgcgaaggtgcggccaaggacggcgtcggcgaagccaaggccgatgcgatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcg
ctggtgagttaccagacggcctggctcaagcgccattacccggccgagttcatggccgcg
acgctgtcttcggacatggacaacaccgaaaaggtggtcggcttcctggacgaggtacgc
aacctcggcctgaccgtgctgccgccgaaggtgaaccagtccgccttcatgtttgaagcg
tccacgccggacacgatccagtacggcctgggggcgatcaagggcgtcggccagggtgcc
tgcgaagcggtggtggaggaacgccttcgcggcggcgactacaccgatctgctcgatttc
tgcacccgcatcggttcggccaagctcaaccggcgcacgctggaagcaatgatcaactgc
ggtgcgctggatgagttgggccacaaccgtgcctcgctgatgctgcagctgccggaagtg
atcaaggccaccgaacagatggcgcgcgagcgtgcgtccggccagaactcgctgttcggc
ggccccgagccgggcgtacaggccatccacctggagctgcaggaaaccgacgaatggccg
ttgctgcagcgcctcaacggcgagcgcgacacgctgggcttctacctcagcggccacccg
ttcgacccgtggcgcgatgacgtgcgcgatctggtcggtaccgacctcggctcggtggaa
aagatctggagcgccaacagcaacagtggtggcggcgagaagcgctggcgtccggaagta
cagaccgtgcttgccggccaggtggtcggcgtgcgccgcaagggcgagagccagatcttc
atccaattggaagatggccgtggccgcgtcgaatgcagcgcgttctccgatgccatggcc
gagttcggccacctgatgaccaaggaccgtatcctggtggtcaagggcggcctgcgcgaa
gacgaattcaatggcggcttcgcactgcgcatccgccagtgctgggacttcgacgaggtc
tgtgcgaactacgccacgcgcctgtcgctgcggctggacctgcgccatcagcggccggtg
tgggagcgcatcgacgccctgctcgaccgccatcgccccggccgcacgcccctgcgcctg
gacctgctgctgaagggccccgatggcggcatcgccggcatgctcgatgtttccgggcag
agcgcggtgcgcgtcgattccaagctgatggaggcgctgcgcgccgaaccggcagtgcgc
acgctgaaggtgcgctacagcccgccatgggccagctga
DBGET
integrated database retrieval system