Sphingobacterium thalpophilum: NCTC11429_00657
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Entry
NCTC11429_00657 CDS
T06778
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11429_00657 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stha03021
]
NCTC11429_00657 (rpoC)
03400 DNA repair and recombination proteins [BR:
stha03400
]
NCTC11429_00657 (rpoC)
Enzymes [BR:
stha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11429_00657 (rpoC)
Transcription machinery [BR:
stha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11429_00657 (rpoC)
DNA repair and recombination proteins [BR:
stha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11429_00657 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
MC1
Motif
Other DBs
NCBI-ProteinID:
VTR30498
UniProt:
A0A4V6KPQ3
LinkDB
All DBs
Position
1:complement(706930..711207)
Genome browser
AA seq
1425 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLASPETILERSSGEVTKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDMIIYYERYVVIQAGIKEEDGINFMDFLTEEEYLDILDTLPKENQYLDD
NDPQKFVAKMGAEALEDLLKRIDLDQLSYDLRHQAANETSQQRKNEALKRLHVVEAFRSS
RENIENRPEWMIVKIVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPHLKLHECGLPKDMAAELYKPFIIRKMIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPTLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAVLEAQILMLASHNILNPANGSPITVPSQDMVLGLYYITKGRRSAGDHIVR
GQDMTFYSAEEVIIALNEKKIDLHAWIKVKTKVRQKDGSIVDTLLETTVGRVIFNQVVPD
EMGFVNELLTKKSLRNIIGEIVKTTGMARAAQFLDDMKELGYQTAFKGGLSFNLEDLNIP
AAKAELIAQATNEVEEVMNNYNMGFITNNERYNQIIDIWTRINNRLTAHVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGTSGGEIIENPILSNFKEGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVVEQDCGGLRGIYTTALKDNDDIV
EPLYDRILGRTPLHDVVHPDTGELIVAANEDITEEIADTIEKVGIEGVEIRTVLTCESKR
GVCACCYGRNLASGKRVQLGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAADSSIIS
KYDGRIEFENVRTVSQTGENGTHQVVLGRSGEVKIIDAHNKIVFQQNIPYGSQLFVEDGS
TVSKGDKLVEWDPYNAVIISEFAGKVEFDAIIEGVTYREESDEQTGHKEKVIIETRDKTK
NPSIKILDKSGEVIRTYNIPVGAHVAVADGVTVKEGGILVKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVSLGGVKRGNREISIESRDGQIKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILAIKGPAAVQHYIVNGIQEVYRLQGVKINDKHFETIVHQMMQK
VNIEDPGDTRFLEKEAVNKWDFMEENDSLFDKKVVVDAGDSNNLRPGQIVSLRKLREENS
SLKRRDLKLVEVREAIPATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NLLGLKENVIVGHLIPSGTGIRQYSNLIVGSREEYDQLLASKEED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaagataataaaattaaaagcaacttcacttcgattacgatcagcttg
gcttctccagagactattttggaacgctcaagtggtgaagttacaaaaccagagacgatt
aactatcgtacctacaaacccgaacgtgacggtttattctgtgagcgtattttcggtccg
gtaaaggactacgaatgtcactgtggtaaatacaaacgtatccgttacaaaggtatcgtg
tgtgaccgttgtggtgttgaggtaactgagaaaaaagtacgtcgtgagcgtatgggacac
atcaacttggtggttcctgtcgcgcatatctggtacttccgttctcttcctaataaaatt
ggttatttattgggacttcctaccaagaaattggatatgatcatttactacgaacgttat
gtggttatccaggctggtatcaaggaagaagacggtatcaactttatggacttcttgacg
gaagaagaatatttagatattttagataccttaccaaaagaaaatcaatatttagacgac
aacgatcctcaaaaattcgttgctaagatgggtgctgaggcattggaagatttgttgaaa
cgtattgatttggatcaattgtcatacgatttacgtcaccaagctgccaatgagacttca
caacaacgtaaaaatgaagcattaaaacgtcttcatgttgttgaagctttccggagctca
cgtgagaatatcgagaaccgtccagaatggatgattgtgaaaattgttccgattatccca
ccggaattacgtcctttagtgcctttggatgggggccgtttcgcgacttcggatttgaac
gacttatatcgtcgtgtgattatccgtaacaatcgtctgaaacgtttgatcgaaatcaaa
gctcctgaagttatcttacgtaacgaaaaacgtatgcttcaagaagcggtagactctttg
tttgacaactcacgtaaagtgaacgctgttaagacagaagggaaccgtgcattgaaatct
ttatctgatattttgaaaggtaaacaaggacgtttccgtcaaaacttattgggtaaacgt
gtggattattctgctcgttcggtaattgttgtgggtccgcacctaaaattacacgagtgt
ggtcttcctaaagatatggctgcagagctatacaagccatttatcatccgtaagatgatt
gagcgtggtattgtaaaaactgtaaaatccgctaaaaaaatcgttgaccgtaaagatcct
gtcgtatgggatatccttgaaaatgtattgaaaggccaccctgtattacttaaccgtgcg
cctacgcttcaccgtttgggtatccaggctttccaaccgactttggtcgagggtaaagct
attcagttgcacccattggtgtgtacagcattcaacgccgattttgacggtgaccagatg
gcggttcacttgcctttaggtaatgctgcagttttggaggctcaaattttaatgttggct
tcacacaatattttgaacccagcgaacggatcaccaatcactgtaccatctcaagacatg
gtattgggtctttattatattactaaaggccggagaagtgcaggtgaccatatcgtgaga
ggtcaagatatgactttctattcggcagaagaggtaattattgctctaaacgagaaaaaa
attgaccttcatgcttggattaaagtcaaaacaaaagttagacagaaagatggaagcatc
gttgataccttattggagacaacagtaggtcgtgtgatctttaatcaggttgttcctgat
gagatgggctttgtcaacgaattgctgactaaaaaatctttgcgtaatattatcggtgag
atcgtgaagactacgggtatggcccgtgctgcacagttcttggacgatatgaaagaatta
ggttatcaaacggcgttcaaaggcgggctttcgttcaacttggaagatttgaatattcct
gctgcgaaagctgagttgatcgctcaggcgaccaatgaagttgaggaggtaatgaacaac
tataacatgggtttcattaccaacaacgaacgttacaaccagatcatcgatatttggaca
cgtatcaataaccgattgactgcacacgtaatggatattctttccaacgataaccaaggg
ttcaactctgtgtatatgatgttggattctggagcccgtggatcgaaagagcagattcgt
cagttatgtggtatgcgtggtttgatggctaaacctcagaagtctggtacttcaggtggt
gaaattatcgagaacccgatcttgtcaaactttaaagaaggtttgtccgtattggagtac
tttatctctacccacggtgcgcgtaaaggtcttgccgatacggcgctgaaaacggcggat
gcgggttacttaacgcgtcgtttacatgacgtagcgcaggatatgattgtggtggagcaa
gattgtggaggtttacgtggtatttatacaacggcattaaaagacaacgacgatatcgtt
gagccattatacgatcgtattttaggacgtacaccgttgcacgacgtggtgcatccggat
actggagaattaattgttgctgcaaatgaagatatcactgaagagatcgcggatacaatt
gagaaagttggcatcgaaggagttgagatccgtacagtattgacttgtgaatctaaacgt
ggtgtgtgtgcttgttgttatggtcgtaacttagcttctggtaaacgcgttcaactgggt
gaagctgtcggcgttattgctgcacagtctatcggtgaaccgggtacacagttgacactt
cgtacgttccacgtagggggtacggcatctaacatcgccgccgactcgagcatcatttct
aaatacgatggtagaatcgaatttgaaaacgtacgtacggtttcgcagacaggtgagaac
ggcacacatcaagttgtcttaggacgttctggtgaggttaaaatcatcgatgcacataat
aaaattgttttccaacagaatatcccgtacggttcgcagttgttcgtagaagacggcagc
acagtatctaagggcgataaattggtggaatgggatccatataacgctgtcattatctct
gaatttgccggtaaggtggaatttgatgcaattatcgaaggtgtaacctatcgtgaagag
tctgatgagcaaaccggccacaaagagaaagtaattattgagacacgtgataaaacgaaa
aacccatctatcaagattttagataagtcaggagaagttattcgtacgtataacataccg
gttggagcacacgttgcagtcgctgacggtgttacagtaaaagaaggtggtattttggtt
aagattccgcgttcaacaggtaagactcgagacattacgggtggtcttccacgtgtgact
gaattgtttgaggcgcgtaatccatcgaatcctgctgttgttactgaaattgacggtgtg
gtttcattaggtggtgttaaacgcggtaatcgtgaaatatctatcgagtctcgcgatggt
cagatcaagaagtatttggtgccactttcgaagcatatccttgttcaggacaatgacttc
gtgaaagcaggtatgccgttgtcagatggctcaatttcgccagcggatatcttggctatc
aaaggaccggcggctgttcagcactacattgtcaatggtatccaagaagtataccgtctg
caaggggtgaagatcaatgacaagcacttcgaaacgattgttcaccagatgatgcagaaa
gtcaatattgaagacccgggagatacacgtttcttagagaaagaagccgtaaataaatgg
gatttcatggaagagaatgattcgctatttgacaaaaaggtcgttgttgacgccggagac
tctaacaacttgcgtccaggacaaatcgtttctttacgtaagttgagagaagagaactct
agtttaaaacgtcgtgacctgaaacttgtggaagttcgcgaagcaattccagcgacctca
agcccattgttacaaggtatcactagagcttcattgggtacgaaatcgttcatctcggcg
gcttccttccaggagacaacgaaggtgttgaacgaagctgctatcgcaggtaaacgtgac
aatctattaggtttgaaagagaacgtaattgtcggtcacttgattccttctggtacaggt
attcgccaatatagcaacttaatcgttggttcccgtgaagaatacgatcaattgttagct
tcgaaagaagaagattaa
DBGET
integrated database retrieval system
