Caldimonas thermodepolymerans: IS481_15765
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Entry
IS481_15765 CDS
T06911
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sthm
Caldimonas thermodepolymerans
Pathway
sthm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IS481_15765 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sthm03021
]
IS481_15765 (rpoA)
03400 DNA repair and recombination proteins [BR:
sthm03400
]
IS481_15765 (rpoA)
Enzymes [BR:
sthm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IS481_15765 (rpoA)
Transcription machinery [BR:
sthm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IS481_15765 (rpoA)
DNA repair and recombination proteins [BR:
sthm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IS481_15765 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QPC31163
LinkDB
All DBs
Position
complement(3345370..3346356)
Genome browser
AA seq
328 aa
AA seq
DB search
MQTNLLKPKAINVEPLGGHRAKVTLEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG
VLHEYSTIDGVQEDVVHIMLNLKGVVFRLHNREEVTLVLRKEGEGPVTAGDIQTPHDVEI
INPDHVIANLSQGGKLDMQIKVEKGRGYVPGNLRRYADEPTKAIGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLVMEIETNGAISPEEAIRASAKILVEQLAVFAQLEGSEIAAFDQ
PAQRAQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTETELLKTPNLGRKSLN
EIKEVLASRGLTLGVRLENWPPSGLDKR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgaatttgctgaaacccaaagccatcaacgtggagccgctgggcggtcaccgc
gcgaaggtcacgctcgagcccttcgagcgcggctacggccacacgctgggcaacgcgctg
cgccgcgtcctgctgtcgtcgatggtgggttatgcgccgaccgaagtcaccatcgccggc
gtgctgcacgagtactcgacgatcgacggcgtgcaggaagacgtggtgcacatcatgctg
aacctcaagggggtggtgttccgcctgcacaaccgcgaggaagtcacgctggtgctgcgc
aaggagggcgagggtccggtgacggccggcgacattcagacgccgcatgacgtcgagatc
atcaacccggaccacgtcatcgcgaacctgtcgcaaggcggcaagctcgacatgcagatc
aaggtcgagaagggccgcggctacgtccccggcaacctgcgccgctacgcggacgagccg
accaaggccatcggccgcatcgtcctcgacgcctcgttctcgccggtcaagcgcgtcagc
tacaccgtcgaaagcgcccgcgtggagcagcgcaccgacctggacaagctggtgatggag
atcgagaccaacggcgccatctcgccggaggaagcgatccgcgcctcggccaagatcctg
gtggaacagctggccgtgttcgcccagctggaaggcagcgagatcgccgccttcgaccag
ccggcccagcgtgcccagcagttcgacccgatcctgctgcgtccggtcgacgagctggag
ttgacggtgcgttcggccaactgcctgaaggccgaaaacatctactacatcggcgacctg
atccagcgcaccgagaccgagctgctcaagaccccgaacctgggtcgcaagtcgctcaac
gagatcaaggaagtcctggcttcccgcggtctcacgctcggcgtgcgcctggaaaactgg
ccgccgtccggcctggacaagcgctga
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