Streptomyces sp. HU2014: M1P56_01085
Help
Entry
M1P56_01085 CDS
T11358
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sthu Streptomyces sp. HU2014
Pathway
sthu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sthu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M1P56_01085 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sthu03021
]
M1P56_01085 (rpoB)
03400 DNA repair and recombination proteins [BR:
sthu03400
]
M1P56_01085 (rpoB)
Enzymes [BR:
sthu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M1P56_01085 (rpoB)
Transcription machinery [BR:
sthu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M1P56_01085 (rpoB)
DNA repair and recombination proteins [BR:
sthu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M1P56_01085 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UQI43073
LinkDB
All DBs
Position
242303..245785
Genome browser
AA seq
1160 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNAAWKARVEA
ALDSGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFCINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFTAKIIPSRGAWLEMEVDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADAPLDAGVLTVDDVIATIKYLVKLHAGEQDTVGENGTSIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQTNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRKVVEGVVTDDVDYLTADEEDRFVIAQANAALTEDMRF
AEARVLVRRRGGEIDYIAGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMMRQ
AVPLIKAEAPLVGTGMEYRCAVDAGDVIKAEKDGVVQEVSADYVTVANDDGTYNTYRVAK
FSRSNQGTSFNQKVVVDEGARVIAGQVLADGPSTDEGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWKVEGDEEWMKRLQAIGADDVAAGTNVATPV
FDGAREDEIAGLFESTIPNRDGERMVLPSGKARMFDGRSGEPFPDPISVGYMYILKLHHL
VDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDV
TGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFR
AAEELGIDLSRREPSSVEEV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgactgccaatacgaacaacggcgccagcaccgccccg
ctgcgcatctcttttgcgaagatcaaggagcccctcgaggttccgaacctccttgcgctg
cagaccgagagcttcgactggctgctcggcaacgccgcctggaaggctcgcgtcgaggct
gcgctggacagtggacaggacgtccccaccaagtccggtctggaggagatcttcgaagag
atctccccgatcgaggacttctccgggtcgatgtcgctgaccttccgcgaccaccgcttc
gagccgccgaagaactccatcgacgagtgcaaggagcgcgacttcacgtacgcggctccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttctgcatcaacggcaccgag
cgtgtcgtcgtctcgcagctggtccgctcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttcacggccaagatcatcccgtcccggggtgcctggctg
gagatggaggtcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tccgtgaccgttctgctcaaggctctcggttggacgaccgagcagatccttgaggagttc
ggcgagtacgagtcgatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctcctcgacatctaccgcaagctgcgtccgggcgagccgccgacccgcgaggccgcg
cagacgctgctcgagaacctctacttcaacccgaagcgctacgacctcgcgaaggtcggc
cgctacaaggtgaacaagaagctcggcgcggacgctcccctcgacgccggtgtgctcacc
gtcgacgacgtcatcgcgaccatcaagtacctggtcaagctgcacgccggcgagcaggac
acggtcggcgagaacggcacctcgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgcacgggtctggct
cgtatggagcgcgtcgtccgcgagcggatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcccagttcatggaccagacgaacccgctctcgggtctgacgcacaagcgtcgt
ctgtccgcgctgggcccgggtggtctgtcgcgtgagcgggccggcttcgaggtccgagac
gtccacccgtcgcactacggccgcatgtgcccgatcgagacgcccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcctacggccgtgtcaacgcgttcggtttcgtcgagacc
ccgtaccgcaaggtcgtcgagggtgtcgtcacggacgacgtcgactacctgactgccgac
gaggaagaccgcttcgtcatcgcccaggcgaacgccgccctcaccgaggacatgcgcttc
gccgaggcccgcgtgctggtccgccgccgtggcggcgagatcgactacatcgccggcgac
gacgtcgactacatggacgtctccccgcgccagatggtgtcggtcgcgaccgcgatgatc
ccgttcctcgagcacgacgacgccaaccgcgcgctcatgggatcgaacatgatgcgccag
gccgttccgctgatcaaggcggaggccccgctggtcggcaccggcatggagtaccgctgc
gcggtcgacgccggtgacgtcatcaaggccgagaaggacggtgtggtccaggaggtctcc
gcggactacgtcacggtcgccaacgacgacggcacgtacaacacgtaccgggtcgccaag
ttctcccgctcgaaccagggcacgtccttcaaccagaaggtcgtcgtggacgagggcgcc
cgcgtgatcgccggtcaggtgctcgccgacggcccgtccacggacgagggcgagatggcg
ctgggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggcccggaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcgtcgccggcgacatcctggtcggcaaggtcacgcccaagggtgagaccgagctg
accccggaggagcgcctgctccgcgcgatcttcggtgagaaggcccgtgaggtccgtgac
acctcgctgaaggtcccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaagagggcgacgagctcccgccgggcgtgaaccagctggtccgcgtctacgtggcc
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggtgtc
atctccaagatcctcccggtcgaggacatgccgttcctcgaggacggcaccccggtcgac
atcatcctcaacccgctcggtgtcccgtcccgaatgaacccgggacaggtcctcgagatc
cacctcggctggctcgccagccgcggctggaaggtcgagggcgacgaggagtggatgaag
cgcctccaggcgatcggcgccgacgacgtcgccgccggcaccaacgtcgcgaccccggtc
ttcgacggcgcccgcgaggacgagatcgccggtctcttcgagtccacgatcccgaaccgc
gacggcgagcgcatggtgctcccgtccggtaaggcccggatgttcgacggccgctccggc
gagccgttcccggacccgatctcggtcgggtacatgtacatcctcaagctgcaccacctg
gtcgacgacaagctgcacgcccgctcgaccggtccgtactccatgatcacgcagcagccg
ctgggtggtaaggctcagttcggtggccagcgcttcggtgagatggaggtgtgggcgctg
gaggcatacggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgacgtc
accggccgagtgaaggtctacgaggcgatcgtcaagggcgagaacatccccgagccgggc
attcccgagtccttcaaggtgctcatcaaggaaatgcagtcgctctgcctcaatgtggag
gtgctgtcctcggacggcatgtccatcgagatgcgcgacacggacgaggacgtcttccgc
gcagcggaggagctcggtatcgacctgtcccggcgcgagccgagcagcgtcgaagaggtc
tga
DBGET
integrated database retrieval system
