Streptococcus thermophilus LMG 18311: stu0006
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Entry
stu0006 CDS
T00213
Symbol
trcF
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stl
Streptococcus thermophilus LMG 18311
Pathway
stl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
stu0006 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stl03400
]
stu0006 (trcF)
Enzymes [BR:
stl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
stu0006 (trcF)
DNA repair and recombination proteins [BR:
stl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
stu0006 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAV59736
UniProt:
Q5M6L3
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All DBs
Position
5046..8552
Genome browser
AA seq
1168 aa
AA seq
DB search
MANTILELFGKNHQLLEWRDKVSLLSRQLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQ
NEAEQLVGDLSAILGEDKVYSFFADDVSAAEFIFASPEKTHSRLESLNFLMDEEASGVLV
TSLVGTKLHLPNPRVYKDSRIDLVLGKEYDLDALSRHLTHIGYQRVEQVLSPGEFSRRGD
ILDIYELTAELPYRLEFFGDEIDGIRQFDSDSQKSLNNLDHVVISPADDIILTREDYQRA
EKALESAVSRADGLHKAYLEEVLSVTSDGHRHKDLRKFLSLFYDKAYTLFDYLPKGTPVF
IDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYFVDSFKTLRNYQPASFFSNFHNG
LGNLKFDKLYQFTQYPMQEFFNQFPLLIDEIRRYTKNKATVILQVGSDKQLNSLKETLEE
YNLDLPLSSFGDLIPHKAQLVLGNLSNGFYFADEKVVLVTEREIFHKKVKRRTRANHISN
AERLKDYNELEKGDYVVHQTHGIGQFKGIETIEIRGVHRDYLTIQYQDAATISLPIEQIE
SLSKYVSVDGKEPKINKLNDGRFQKTKQKVSKQVEDIADNLLKLYAERSQLKGFAFSPDD
DNQRDFEDEFSYAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVN
DGKQVAILVPTTVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDII
IGTHRLLSKDVKFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSM
LGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGGQIFYIYNRVETIDQKVS
ELHELVPEARIGFVHGQMSEVMLENTLLYFLNGDYDILVATTIIETGIDIPNVNTLLIEN
ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM
RDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAINKRQGKTQVRQKGNAEFNLQIDAY
LPSDYISDERQKIEIYKRIREIENQKDYQDLQDELIDRFGEYPDQVAYLIEIGLVKAYLD
AAFAELVERKNDTIIVRFEKVSLKFFLTQDYFEAISKTNLKARISDNQGKVEIIFDVRNK
KDYEILEELKIFGQTFMEIKKRKEKKET
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggctaatacaatcttagaactttttgggaagaatcatcaattgcttgagtggcgtgat
aaggtaagcttattgagtaggcaattggtcatgggattttctggttcgagcaaggcagtt
gccatggcatctgccctttctaatcaggttcctaagatttttatagttacctcaacacaa
aatgaagctgagcaattagtaggagatttatcagctatcttaggagaggataaggtttat
tctttttttgcggatgatgtatcagctgctgaatttatctttgcttcaccagaaaaaact
cattctcgtcttgaaagtcttaactttttaatggatgaagaggcaagtggggtcttggtt
acaagtttagttggtacgaagttacatttgcctaatcctagggtttataaggactctcga
atcgacttagtactagggaaggaatatgatttagatgctctcagtaggcatctaacgcat
attgggtatcaaagagtagagcaagttctttcacctggtgagtttagtcgtaggggggat
attttagatatttacgaattgactgcagagcttccctaccgattagagttttttggagat
gagattgatggcattcgtcagtttgatagcgatagtcagaaatctttaaacaatttagat
catgttgtcatatcaccggcggatgatattatcttaacaagagaagattaccaacgtgct
gagaaggccctagaaagtgcggtatcgagggcagacggtcttcataaggcttaccttgag
gaagttctatcagtgacgagtgatggtcatcgccataaagatttacgtaagtttttgtct
ctcttttatgacaaagcttataccttatttgactatcttccaaaagggactcctgtattc
attgatgattttcaaaagatagtggaccgccatggacgtcttgaattggaagtggctaat
cttttaactgaggatcttcatcaaggtaagtctctgagtcatctaaactacttcgtggat
tcatttaagactttacgtaactatcagccagctagcttcttttctaatttccataatgga
ttaggaaatcttaaatttgataagttgtatcaattcacacaataccctatgcaggagttt
ttcaaccaatttccattactgattgacgaaattcgtcgttatactaagaataaggcaacg
gttattttacaagtagggtctgataagcaacttaattctttgaaggaaaccttggaagag
tacaatctagatttacctcttagtagctttggagatttgatacctcataaggctcaacta
gtcctaggaaacttatcgaatggcttttactttgcagatgaaaaggttgttctggttact
gaacgtgagatttttcataaaaaagtaaaacgtcgtacgcgtgctaaccatatttctaat
gctgagcgtcttaaagactataatgaacttgaaaaaggtgattatgttgtacaccagact
catggtataggacaatttaaaggtattgagactattgaaattagaggggtacaccgtgac
tacttgaccattcaatatcaggatgctgcaacaatttctctacctattgagcagattgag
agtctctctaagtatgtgtcagtggacgggaaagagcctaaaattaataaactcaatgat
ggtcgtttccaaaagaccaaacaaaaagtaagcaagcaggtagaggatattgctgataat
ctcttaaaactctatgccgagcgaagtcaactgaaaggatttgctttttcaccggatgat
gataatcaaagggattttgaagatgagttctcctatgctgagacagtggatcaactgcgt
tccattaaggaaattaaggcggacatggagtcagacaaacctatggatcgtctcttggtt
ggtgatgttggttttggtaagacagaggtagccatgcgtgctgccttcaaggcggttaat
gatgggaagcaagttgctatcctagttcctaccacagttcttgcccatcagcattatatg
aattttaaagagcgttttgaaaatcatgctgttgaagtagatgaactcagtcgttttaga
agtaaaaaagagcaaaatgagactattaaaaatctagctaaaggacgtattgatattatt
attggtacccaccgattgttgtctaaagatgttaagttttctgatttaggcttgctagta
attgatgaagaacaacgttttggcgtgaagcataaagagaaacttaaggagttgaaagct
aaagttgatgtccttactctaactgcgacccctattcctcgtacacttcatatgtctatg
ttgggtattcgtgatttgtcgattattgagacagcacctaccaaccgttatccagttcaa
acttatgttatggaaaccaatcctggtcttattcgagaagcgatattaagggagatggac
agaggtggccagattttttatatttataatcgtgttgaaaccattgatcaaaaagtttct
gaactgcatgagctagtccctgaagcacgtatcggatttgttcatggtcagatgagtgaa
gttatgttggagaatactctattatattttttgaatggtgattacgatattttggtagca
acgaccattatcgagacaggcattgatatccccaatgttaatacacttctcattgagaat
gcagaccatatgggcttgtctaccctttatcagctaagaggtcgtgtgggacgtagtaat
cgaattgcctatgcctaccttatgtatcatcctgacaaagtgttgacggaagtctcagag
aagcgtttggatgctattaagggatttacagaactgggatcaggtttcaaaattgctatg
cgtgatttatctattcgcggtgcagggaatattcttggtgcttctcaaagtggtttcatc
gactcagtcggatttgaaatgtactcgcaactcttggaagaggctatcaataagcgtcaa
ggtaagactcaggttcgtcaaaaaggaaatgcagagttcaatcttcagattgatgcttac
cttccttctgactatatttctgacgagcgccaaaaaattgaaatttataagcgtattcgt
gaaattgagaatcagaaagactaccaggaccttcaagatgagttgattgaccgctttgga
gaatatccagatcaagttgcctatctcattgagattggtctggttaaggcctatttagat
gctgcctttgcagaattagtcgagcgtaagaacgatactatcatcgttcgtttcgaaaaa
gtctctctaaaattcttcttgacacaagactattttgaagccatctctaagacgaattta
aaggcaagaattagtgataaccaaggaaaagtagagattatttttgatgttcgtaacaag
aaagactatgaaatccttgaggaattaaagatttttggtcagacatttatggaaattaaa
aaacgtaaagaaaaaaaagaaacttaa
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