Streptococcus thermophilus LMG 18311: stu1868
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Entry
stu1868 CDS
T00213
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stl
Streptococcus thermophilus LMG 18311
Pathway
stl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
stu1868 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stl03021
]
stu1868 (rpoB)
03400 DNA repair and recombination proteins [BR:
stl03400
]
stu1868 (rpoB)
Enzymes [BR:
stl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
stu1868 (rpoB)
Transcription machinery [BR:
stl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
stu1868 (rpoB)
DNA repair and recombination proteins [BR:
stl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
stu1868 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AAV61467
UniProt:
Q5M2F5
LinkDB
All DBs
Position
complement(1663831..1667412)
Genome browser
AA seq
1193 aa
AA seq
DB search
MAGHDVQYGKHRTRRSFSRIKEVLGLPNLIEIQTDSFKEFLDTGLKEVFEDVLPISNFTD
TMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVRNTIEKDIHKNPADSRTDEALKE
IYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGRYKLNKKLNIKTRLLGQTIAENLV
DPETGEILVEAGTEMTRDVIDSIAEHLDGDLNKFVYTPNDYAVVTEPVVLQKFKVVAPND
PDRVVTIVGNANPDDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRVRAVGELL
ANQFRIGLARMERNVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYGR
LNKYGFIQTPYRKVDRATGKVTNEVVWLTADEEDEYIVAQANSKLNEDGTFAEEIVMGRH
QGVNQEYPSHLVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP
FVGTGMEYQAAHDSGAAVIAKHDGKVVYSDADKVEVRREDGSLDVYTIQKFRRSNSGTAY
NQRTLVKVGDIVEKGDFIADGPSMEGGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEFESETRDTKLGPEEITRELPNVSEEALKNLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIYIATPVFDGASSEDLWDTVREAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNILQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDYEVELRDLDEGEDDDVMHVDDLEKARVQQAKEAAELEKAKEEALDKTE
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgttcaatacgggaagcatcgtacccgtcgtagtttttcaagaatc
aaagaagttcttggtttaccaaacttgattgaaatccaaacggattcattcaaagaattc
ttagatactggtcttaaagaggtttttgaggatgtacttcctatttcaaacttcacagac
accatggaattggaatttgttggttacgaattgaaggaacctaagtatacacttgaagaa
gctcgtatccatgatgcatcatactcagcaccaatctttgtgactttccgtcttattaac
aaagaaactggtgaaatcaaaactcaggaagtcttcttcggagatttcccaattatgact
gagatgggtacttttatcatcaatggtggtgaacgtattatcgtttctcagttggtgcgc
tcacctggtgtttactttaacgataaggtcgataaaaacggtaaagtgggttacggatca
acagttattcctaaccgtggggcatggcttgagcttgaaactgattcaaaagacatcgcc
tacactcgtatcgaccgtacgcgtaagattccattcacaacgcttgtgcgtgcacttgga
ttctcaggtgatgacgaaattgttgatatctttggtgatagcgagttggttcgtaacact
attgaaaaagatatccacaaaaatccagcagattcacgtactgatgaagcgcttaaagaa
atttatgaaagacttcgtccaggtgaaccaaaaactgctgacagctcacgtagcttgctt
gtagctcgtttctttgacccacgtcgttacgacttggctgctgttggtcgttacaaactt
aacaaaaaacttaacatcaagacacgtcttttgggacaaacaattgctgaaaacttggta
gatcctgaaacaggtgaaatccttgttgaagctgggactgaaatgacacgtgatgtgatt
gattcaatcgcagaacacttggacggtgatttgaacaaatttgtatacacaccaaacgat
tatgcagtggttacagaacctgttgttcttcaaaaattcaaggtcgttgcaccaaatgat
ccagatcgtgtggttacaattgttggtaatgccaatccagatgataaagttcgtgctttg
acaacagcggatatcttggctgaaatgagctacttcctcaaccttgctgaaggtatcggt
aaagtagatgatatcgaccaccttggtaaccgtcgtgtccgtgccgttggtgaattgctt
gctaaccaattccgtattggtttggctcgtatggaacgaaacgtgcgtgaacgtatgtca
gttcaagataatgaagccttgacaccacaacaaatcatcaatattcgtcctgtaactgca
gctgttaaagaattcttcggttcttcacagttgtcacagttcatggaccagcacaaccca
ttgtcagagttgtcacacaaacgtcgtttgtcagccttgggacctggtggtttgacacgt
gaccgtgccggatatgaagttcgtgacgtgcattacacgcactacggtcgtatgtgtcca
attgaaacacctgaaggacctaacattggtttgatcaataacttgtctacatacggacgc
cttaacaagtacggtttcattcaaacaccatatcgtaaggttgaccgtgcaactggtaaa
gtaacaaacgaagtggtttggttgactgccgacgaagaagatgagtacatagttgctcag
gctaactctaaattgaacgaagatggaacatttgcagaagaaattgtcatgggtcgtcac
caaggtgttaaccaagagtacccatcacaccttgtagatttcgtggatgtttctcctaaa
caggtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactctaaccgt
gccctcatgggtgccaacatgcaacgtcaagctgtgccattgattgatccaaaagcacca
tttgttggtactggtatggaatatcaagctgcccatgattcaggtgctgcagttatcgct
aaacatgatggtaaagttgtctattctgatgccgataaggttgaagttcgtcgtgaagat
ggttctcttgacgtctatactattcaaaaattccgtcgttcaaactcaggtactgcgtat
aaccaacgtactttggttaaggttggtgatattgtcgaaaaaggagattttatcgctgat
ggtccatctatggaaggtggagaaatggccctcggtcaaaaccctattgtcgcatacatg
acatgggaaggctacaacttcgaggatgctgttatcatgagtgaacgcctagtgaaagac
gatgtttatacatctgttcacttggaagaattcgaatcagaaacacgtgatacaaagctt
ggacctgaagaaatcacacgtgaattgccaaacgttagtgaagaagcccttaaaaacctt
gacgaaatgggtattatccgtatcggtgctgaggttaaagaaggtgatattcttgttggt
aaggtaacacctaagggtgaaaaagacctttctgctgaagaacgtcttctccatgctatc
tttggtgataaatctcgtgaagtacgtgatacatcactccgtgtacctcatggtggtgat
ggtgtcgttcgtgatgttaaaatctttacacgtgcaaacggtgatgaattgcaatcaggt
gttaacatgcttgttcgtgtttacatcgctcaaaaacgtaaaatcaaggtcggagataag
atggctggtcgtcacggtaacaaaggggttgtttctcgtattgttcctgttgaagacatg
ccttaccttccagacggtacaccagttgacatcatgttgaaccctcttggggtgccatca
cgtatgaatattggtcaggttatggaacttcaccttggtatggctgctcgtaacttgggt
atctacatcgcaacaccagtctttgatggggcaagctcagaagatctctgggatactgtt
cgtgaagctggtatggatagtgatgctaagacaatcctttacgatggacgtacaggagag
ccatttgataaccgtgtgtcagttggtgtcatgtacatgatcaaacttcaccacatggtt
gatgataaacttcacgctcgttcggtaggtccttactcactcgttacccaacaacctctt
ggtggtaaagcacaatttggtggacaacgtttcggtgagatggaggtttgggctcttgaa
gcttatggtgcttcaaacattcttcaagaaatcttgacttacaagtcagatgacgttaac
ggacgtttgaaagcctatgaagctatcactaaaggaaaaccaattccaaaaccaggtgta
ccagaatcattccgagtgctcgttaaagaattgcaatcacttggtcttgatatgcgtgtt
cttgatgaggatgactatgaagttgaattgcgtgatcttgatgaaggtgaagatgatgac
gtcatgcacgttgatgatcttgaaaaagcacgtgtacaacaagccaaagaagctgctgaa
ttagaaaaagctaaagaagaagctttagataaaacagaataa
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