Sphaerodactylus townsendi (Townsend's least gecko): 125434912
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Entry
125434912 CDS
T08213
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04518
Integrin signaling
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125434912 (COL6A2)
04518 Integrin signaling
125434912 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125434912 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125434912 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stow04147
]
125434912 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125434912 (COL6A2)
Exosome [BR:
stow04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125434912 (COL6A2)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125434912 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
125434912 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
125434912
NCBI-ProteinID:
XP_048356729
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All DBs
Position
LG01:178036841..178116728
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AA seq
1019 aa
AA seq
DB search
MSKMFPGAFLIVLLYTAVVPFLAQNDVDVVRASPSCEDKTDCPINVYFVIDTSESVALQT
VPIQSLVDNIKLFIPAFIRKLENELYQSQVSITWQFAGLHFSDVVKIFSEFTTSKDQFLN
RLQSIQYIGRGTFTDCAISNMTEQILTKTPQGVKYAIVITDGHVTGSPCGGMKMQAERAR
DADIKLFAVAPSQNIYETGLREIANSPHELYRNNYATTKRDALDVDEDTIDRIIQVMKHD
AYGECYKMRCLEIQGPAGPKGFRGQKGAKGNMGGPGAPGVKGRQGDPGIEGPIGHPGPKG
VHGLKGEKGEFGGDGRKGAGGLAGRNGTDGQKGKLGRIGAPGCKGDPGDRGPDGYPGTAG
DQGLLGDPGVKGYPGRPGRSGPPGAPGERGGRGPKGTNGAPGSPGNKGGKGGPGPAGPKG
EPGRRGDPGPKGTPAGPGAKGERGDPGSEGLRGLAGEVGSKGGRGERGLPGPRGPQGSVG
EGGKPGSRGDAGDAGLRGDSGLPGPKGDRGRPGFNYPGPRGLSGEKGEKGVQGLEGGRGD
FGLKGPPGPKGEKGEPADGGPEGEPGPRGPIGDTGPEGGPGPAGDPGLTDCDVMTYIRET
CGCCDCEKVCGPLDIVFIIDSSESIGYTNFSMEKNFVINVVSRLGSIAKDPKSETGARVG
VVQYSHEGTFEAIQLNDPNINSLSSFKEAVKRLQWIAGGTWTHSALQFAYNTLIKESRRE
KARVFAVVVTDGRHDPRDIDSQPLCGGDVDVTAIGIGDMFHKEQEEETLKSIACGDDGKV
QKMRLFTELVAEEFIDRMEFELCPDPQIVCPELPCQTELAVAQCTQRPVDIVFLLDGSER
IGALNFQRAHDFIENVARRLTLARSDNENMNARLALLQYGSENEHVVVFPLTYNLTDISD
SIAKIAYLDSSSNLGSAIIYAVNNLVINPRDRARGARRNAELSFVFITDGITGNKNLDEA
IDSMKKQNVVPTVVALGSDVDMSVLMKIGLGDRAAIFREKDYASLSQPGFFDRFIRWIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatgttcccgggtgcctttttaatcgttctgctctacacggctgtggttccc
ttccttgctcaaaatgacgttgatgtggttcgcgcctcaccttcctgtgaagataaaact
gactgcccaatcaacgtatactttgtgattgacacctcggagagcgtggccctgcagacg
gtgcccatccagagtctggtggataacatcaaattgtttatcccggcattcatcagaaag
ctggagaacgaactttaccagagccaagtgtcaatcacttggcaattcgctggacttcat
ttctcagatgtggtgaagattttcagtgaattcaccaccagcaaggaccagtttttaaac
cggttgcaaagcattcagtacattggcagaggcacttttacggattgtgctatctccaac
atgacagaacagatacttaccaagacccctcagggagtgaagtatgcaattgtaatcact
gatggtcacgtgacgggcagtccctgcggagggatgaagatgcaggcggaaagagcacgt
gatgccgatatcaagctctttgcggtggccccaagtcagaacatctacgaaaccggcctc
cgagagatcgccaattccccgcacgaactttaccgtaacaattatgccacaaccaagaga
gatgcccttgatgttgatgaggacaccattgatagaatcatccaagttatgaaacatgac
gcctatggagagtgctacaaaatgcgctgtctggaaattcaaggcccagccggtccgaag
ggcttccgagggcagaagggtgcgaaaggtaacatgggaggccctggagctcctggtgtt
aaaggacgacagggtgacccaggaattgaaggaccgattggacatcctggtcccaaggga
gttcatgggctcaaaggagaaaagggtgaatttggaggagatggcagaaagggagctggt
ggtttagctggaaggaatggcacggatggtcagaagggcaagcttgggcgtattggagct
cctggatgtaagggcgacccaggggacaggggtcctgatggctacccaggtaccgcgggg
gatcaaggactacttggtgacccaggagtaaagggttatcctggtcgacctggccggagt
ggaccaccgggtgctcctggagaaagaggaggcaggggaccaaaaggcaccaatggagcc
cctggaagccctggtaacaaaggaggcaaaggtggccctggacctgctggccccaaagga
gaacccggccgtcgaggtgatccaggcccaaaggggaccccagctggtcctggagccaaa
ggagagaggggtgatcctggttccgagggcctacgggggctagcaggagaagttgggagc
aaaggaggaaggggggaacgaggactacctggcccacgaggccctcaagggtctgtgggg
gagggaggcaagcctggttctcgaggagatgctggtgatgcaggactaaggggtgactcg
ggccttccaggaccaaagggagaccgaggaagacctggctttaactatcctggccccaga
gggctttcgggtgaaaagggcgagaagggcgttcaaggactggagggtggaagaggggac
tttggactgaaaggcccaccaggaccaaaaggagagaaaggtgaacctgctgatggtggc
ccagaaggtgaacctggacccagaggacctattggtgatactggccctgagggaggccct
ggtcctgcaggagatcctggcttaacggattgtgatgtgatgacctacatccgagagacc
tgtgggtgttgcgattgtgagaaggtttgtggccccttggacatcgtcttcatcatagac
agctcagagagcatcggctacaccaatttctccatggagaagaactttgtcatcaatgtt
gtgagccgacttggttccattgccaaagaccccaaatcggagacaggggcccgagttgga
gtggtgcagtacagtcacgaaggcacctttgaagccatccagctcaatgatccgaacatc
aactccctctccagtttcaaagaggccgtgaagaggctacagtggatagcagggggcacc
tggacacactccgccctccagttcgcctacaacacgctcatcaaagaaagccggcgggag
aaagcccgggtttttgccgtggtggtgactgacgggcggcacgatccccgggacatagac
tcccaacctctctgcggcggggacgtcgacgtcaccgctatcgggattggggacatgttc
cacaaggaacaggaagaagagaccctgaagtccatcgcctgtggcgacgacggcaaagtt
cagaagatgaggctgtttacagagctggtggccgaagagttcattgaccgcatggagttc
gaactctgcccagatccccagattgtctgtcctgagctgccatgccaaacagagcttgct
gtagctcagtgcacgcaaaggccggttgacatcgtcttcctcctagacggctctgaaagg
attggcgcgctgaatttccagagggcccatgactttatagaaaatgtggcccgtcgcctc
acgctggccagaagtgacaacgagaacatgaacgcgcgccttgccctcctacaatacggg
agtgagaatgaacatgtggtcgttttcccattaacgtacaatctcacggacatctccgat
tccatagcaaaaatcgcatacttggactcttcttccaacctgggttctgccatcatctat
gccgtcaacaatctcgtcatcaaccccagagacagggcgaggggagcccggcgcaacgcg
gagctttcctttgtcttcatcacagatggcatcacgggcaacaaaaatctagatgaagcc
attgactccatgaagaaacagaatgtcgttcccaccgtggtggccttaggcagtgatgtg
gacatgagtgtcctgatgaaaattggtctgggggaccgggcggccattttccgggagaag
gactacgccagcctctcccagcctggtttcttcgacagattcattaggtggatctgttag
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