Sphaerodactylus townsendi (Townsend's least gecko): 125440828
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Entry
125440828 CDS
T08213
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04518
Integrin signaling
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125440828
04518 Integrin signaling
125440828
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125440828
09142 Cell motility
04820 Cytoskeleton in muscle cells
125440828
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stow04147
]
125440828
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125440828
Exosome [BR:
stow04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125440828
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125440828
Hyaluronan
Extracellular matrix or blood plasma proteins
125440828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
HDA2-3
Motif
Other DBs
NCBI-GeneID:
125440828
NCBI-ProteinID:
XP_048366815
LinkDB
All DBs
Position
LG11:complement(29726470..29801550)
Genome browser
AA seq
2263 aa
AA seq
DB search
MLLILFLIVLGTQTSIAQKPAPESTDVVLLIDSSNALGKKSFPSVKSFVNRVISSLPVGP
NKYRIALVQYSDDVHVEFQLDDFKGKPPMLNHLKKSVSYRGGSLKTGNAIQKVHETFFKV
PRRDRNQIVVVTTSGPSEDDVKRPAKRLQDDGIKIIALGMQAASVQELRSVATQHFFYNL
PTPRDFATFSQNMSTVIGEAIQLDDSVVVSTPSPPRITSPPRIPSPPRIPSPPSINVSVA
PPPECLHDSVADIVFVVDEGVSVENSRYIESFLSDTINSLDVKKGCIQTGLVTYSTESQI
ISLLKNETVKTDGLWDLHRSSGKSNLGAAINFTRKRVFDKHAGSRKTQGVEQIATIITHR
PADDLLSDAATLLRQAGVTVFAIGVEGANATQLTEIASYPPERNVLKLARFSDLPNQATT
FKKKLFNQIQDTLYVQSERRLLLKTGCIDTEEADIYFLVDGSSSIGWLEFDQMKTFLKEV
TKQFNVGPNHVRFGVVQYSHASSIKLHFELDEYTKTNTLERAINNINQLTGDTYTGEALK
FMQPLFEKARQQRGNKVPCYLIVLTDGEAHDNVKIPAEKLRNAKVNIYAIGVRQYNITQL
HEIAGSRVYSVQQFDSLKFIQDEIVRDVCSQEACKEMKADIMFLVDSSGSIGTENFNKMK
NFMSDLVNKSDIGLDQVRIGVVQFSGSAKEEFPLNKYSAKSDIIEAIRRMVPIEENTLTG
KALEFVAEYFNSSKGSRSSVNKILILLTDGEAQDEVAAPAMSLRKDGITIYSVGVFNANK
TQLEEISGKLELVFYVENFDILEKIEGDIIFGICNPLEDGIPECKRIDRLDVVFVIDSSG
SIGDTNYDLMKDFMIGLVNKSDVGSDRVQFGALKYSDDPRTLFYLNTYNKKADVISAIRS
DTLLGQTTYTAKALRHSELLFTEAHGSRHYRNVPQVLIVITDGESHDAVELDEVSKKLRA
RGIEIYAIGIEGAKPDELQTMAGSNKSYYYVEQFAGLQNISTELSDELCDDSKPECEIYA
DLVFLIDGSNSIRVNDFETMKDFLKKLLDQINYNNKMQIGMAQFSVFYQEEFPLSSNYSK
SEVQDKISKVSKMTGNKTNIGEALKKVKAFFSPPRRRVIRDIQPKLLVITDGRSYDRVAQ
PAEDLRKEGVEIYAIGVGNVKDTELLQIAGSPERKYRIANFSGLSNLKKRVTNEMCNGGV
KAACFVDIVIGFDISSQKLGDHLFHGQSLLETHLPKILEYLTSVSTVSCGTGTKTQFSVA
ISKENMNSTSSSDLQVDPTKIMEELRKVTVNKPSYLNVPFLNTLWNTFGNLPRNEKRSQV
LLLFSDGLDADVKLLKERSEEFRKKGLDGLITVTLEGASNYHNLQYIEFGKGFGYHNHLT
ISLQNIAQSLFGYMSQIAERTCCCVFCTCMGEEGLAGQRSIPGTKGPTGANGIPGYIGDD
GEPGPSGLPGPYGRQGYTGCQGDQGAKGQRGWSGKKGDNGIYGIDGINGEEGSQGLPGPK
GEKGDPGQPGNPGSRGLPGEPGSKGFQGDPGNPGVDSIIKGAVGPNGLRGSKGERGPNGS
AGSAGSKGNTGAEGQRGVPGPMGVRGQPGPGGLPGEPGFQGPQGEAGIPGVSGEKGTSGN
KGLQGSFGVAGPKGDQGKPGIKGNKGENGDPGEKGERGLRGQRGTKGEAGTAGYGKRGRK
GSKGQEGFPGDTGIQGEIGVTGIPGEPGPKGHRGKMGPVGETGVRGTRGERGYPGRPGAK
GTKGLASFSPCELIEYVRERSPCWKGAQACPVYPTELVFALDVSQDTTPATFERMREVIT
AIVNSTRTRESNCPVGARVAVVSYNSNTHHLIRFSDFKNKKSLLQELKSLSYQRSSSGRD
IGGSMRYVARHVFKRTLQSPNMRKVAVFFSNGQSTDTVSISTAVLEFRALDILPVVIAFK
NVPEVNRAFSMDDSGLFQVINIRQERDYTTALQRFQWCILCYDKCKVNASCLRDETSPPA
YVDAAFILESSRKVSPLEFAKLKDFLSLSIDNFDVSAQPESTSVGDRLAVVSHAPPDFRP
QTQKNPVKAEFDFVTFGSKKQMKRHIQESIQQLNGAAALGHAIQWTITNVFTGAPNQRKH
RAIFVISVGETSRWDKEVLKDAALRAKCQGYALFVLSLGHEYNVELEELVSSPTEHHLVQ
LGRCHKAELGYAVKFLKPFVRLLRNEINSYPPAQLKRKCSDINTQKPIEVPLQSRYSIAK
DETVSRRAQRLETESEVWEHLSGDSVSHEHLISSEQQTIVFGN
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgattttgtttctcattgttcttgggacacagacttctatagcacagaaacct
gcccctgagtctacagatgtagtccttttgattgacagctcaaatgctcttggcaaaaag
tctttcccttctgtgaaatcgtttgttaacagagtaatcagcagtcttccagtaggtccg
aacaaatatcgcattgcacttgtgcagtacagtgatgatgtgcacgtcgaattccagctg
gatgattttaaaggcaaacccccaatgttaaaccatcttaaaaagagtgtttcatacagg
ggtgggtctttaaaaacaggaaatgccatacaaaaggtccatgaaacatttttcaaagtc
ccaaggagagacagaaaccaaattgttgtggtcacaacttcaggtccttcagaagatgat
gtgaagagacctgcaaaaaggcttcaggatgatgggataaaaataatagctttaggaatg
caggctgcatctgttcaggaacttcgatcagtggctacacagcatttcttttataacctt
cctacaccaagagattttgcaacattttctcaaaatatgtcgacagttattggagaagcc
atacaactggatgattcagtggtcgtctcaacgcctagtccaccaaggataactagtcca
ccaaggatacctagtccaccaaggatacctagtccaccaagtataaatgttagcgtagca
cccccaccagagtgtctacatgattcagttgcagacattgtatttgtggtggatgaaggc
gtttcagttgaaaactcccgctacattgaatcattcttgagtgacacaataaactctctt
gatgtgaagaaaggatgtatacaaactggtttagtgacctacagcactgagtcacaaata
atatcattgctaaagaatgaaacagtcaaaactgatggtctatgggaccttcacagatct
tcagggaaatctaacttgggtgctgccattaattttaccaggaaaagagtttttgataag
catgctggaagcagaaagactcaaggagtggaacaaattgccactataatcacccacaga
cctgcagacgacctcttaagtgatgcagcgactctccttagacaagctggtgtgacagtg
tttgccataggtgtcgaaggagctaatgcgacccagttaactgagatagcatcatatcca
cctgaacgaaatgttttaaaacttgccagattttctgacctgccaaatcaggccacgact
ttcaaaaagaaactcttcaatcaaatacaggacacactttatgttcaatctgaaagaaga
ttactgctcaaaacaggatgtattgacacagaagaggctgatatttacttccttgttgat
ggctcttcaagcattggctggttagagtttgatcaaatgaaaacgtttttgaaggaagta
actaagcagtttaacgttggaccaaatcacgttcgatttggagttgtgcaatattcacat
gcttctagtattaaattgcactttgaacttgatgagtacactaagacaaacacattagaa
agagctattaataatatcaaccagttaacaggagatacatacaccggagaagctttaaaa
ttcatgcagcctttgtttgaaaaggcaaggcaacaacgtggaaacaaagtgccctgctat
ctcattgtgttgacagatggggaggcccatgataatgtgaagatacctgctgagaaactg
aggaatgcaaaggtgaacatctacgccattggtgtaagacagtataatataacacaactg
catgagattgcaggctcaagggtttactctgtgcaacaatttgactccttgaaatttata
caagatgagattgtccgagatgtatgttctcaagaagcctgtaaggaaatgaaagctgac
atcatgttcctagtggacagctccggtagcattggcactgagaattttaataaaatgaag
aactttatgagtgacctggtaaacaaatctgacatcggcttagaccaagttcgcattggc
gttgttcagttcagtggcagtgctaaagaagaatttccactaaacaaatattcggcaaaa
agtgacataattgaagcgattagaaggatggtacccatcgaagagaacacactcactgga
aaagcactggaatttgtggctgaatatttcaattcatccaaagggtcacgctcctccgtg
aacaaaattctcatcttgctcacagatggggaagcacaggatgaagtagcagctccagct
atgtccctgagaaaggatggtatcactatctattcagttggggtgtttaatgccaataaa
acacagcttgaagagataagtgggaaacttgagctggtgttttatgtagaaaactttgat
attcttgagaagatagaaggcgacatcatttttggcatatgtaatccccttgaggatgga
attccagagtgcaaaaggatagaccgtttagatgttgtatttgtaatagacagttctggc
agcataggggacacaaactatgacctcatgaaagacttcatgattggcttggtcaataaa
tctgatgttggcagtgatcgtgttcagttcggagctctgaagtattctgatgatccacgt
acacttttttaccttaatacctacaataagaaagcagatgtcatttcagctatccgaagt
gacacacttttgggccaaactacatacacagctaaagctcttagacactcagaattgttg
ttcactgaggcccatggaagtcgccactacaggaatgttcctcaggttcttattgtgatt
actgatggtgaatcacatgatgcagtggaacttgatgaagtgtctaaaaaactcagggct
cgtggcattgagatatatgccattgggatagaaggtgcaaagccagatgagcttcagacc
atggcaggatcaaacaaatcttactactatgtggaacagtttgcgggattacaaaacata
tccacagagttatcagatgagctgtgtgatgattcaaagccagaatgtgaaatctacgct
gatcttgttttcttgattgatggttccaacagtatacgagtgaatgattttgagacaatg
aaagacttcttgaagaaactgcttgatcagattaattataataacaaaatgcaaattggc
atggcccaattcagtgtattttaccaagaagaatttcctttgagtagtaactatagcaaa
tcagaggtgcaagacaaaatctctaaagtctcaaagatgacaggtaacaaaactaacatc
ggagaagctctcaaaaaagtgaaggccttcttcagtccaccaagacgcagagtgattaga
gatattcagccaaaattgctggtaatcactgatggacgctcatatgaccgggtcgctcaa
ccagctgaggatctgagaaaggagggtgtggagatatatgcaataggagtagggaatgta
aaagatacagaacttctacagatagctggatccccagagaggaaatacagaattgctaat
ttcagtgggctgtcaaacctcaaaaaacgtgttactaacgaaatgtgtaatggtggagtt
aaagcagcatgttttgtggatatcgttattggatttgacatttcatctcaaaagctgggt
gatcatttattccatggacagtccctgttggaaacccacctgcctaagattttagaatat
ttgacatctgtaagcactgtgagttgcggtacaggaacaaagacacagttcagcgtggct
atttctaaggaaaacatgaactcaacttcctcatcagacctccaagttgatcctacaaaa
atcatggaggaactcagaaaagttacagtcaacaaaccatcttatctaaatgttccattc
ttgaacacactttggaatacatttggcaatctacctcgtaatgaaaaacgaagccaggtg
ttacttcttttctctgacggtttggatgcggatgtaaaattgctcaaagaaagatctgaa
gaatttagaaaaaaaggacttgatggactgataacagttactctggaaggagctagcaac
tatcataatttacaatacattgagtttggaaaaggatttggatatcataatcatttgacc
attagcttgcaaaatattgcccaaagcttatttgggtatatgagccaaattgctgagaga
acatgctgctgtgtattttgtacctgcatgggtgaagaaggcctcgctgggcagagaagc
attccagggacaaagggacctactggtgctaatggaattccaggatacataggagatgat
ggagagccaggtcccagtgggctacctggaccatatggacggcagggttatactgggtgc
caaggtgatcaaggagcaaaagggcaacgaggatggagtgggaaaaagggagacaatggg
atttatggaattgatggaattaatggagaagagggatcacaaggactgccaggaccaaaa
ggagaaaagggagaccctggccagccgggcaatccaggatcaagaggacttcctggtgaa
cctggttcgaaaggctttcaaggagatcccggtaatcctggagtagacagcatcattaaa
ggagcagttggccccaatgggttacgtgggagcaagggtgaaagaggaccaaatggttca
gcaggctctgcgggatctaaaggcaacacgggagcggagggacaaagaggagttccgggg
ccaatgggggtgagaggacaacctggaccaggtggtttgccaggcgaaccaggatttcaa
ggcccacagggtgaagctggtattcctggtgtgagtggagagaaaggaacttcagggaat
aaaggtcttcagggaagctttggagtagctggtcctaaaggtgatcaaggaaaacctgga
atcaaaggaaataaaggagaaaatggggatcctggagagaaaggagaaagaggtctccgt
ggtcagcggggaacaaagggagaagcaggaactgctggttatggcaaacgtggaagaaaa
ggatcaaagggtcaagaaggattccctggagacactggaattcagggtgaaattggagtc
actggcattcctggggaacctggtccaaaagggcatagaggaaaaatgggtcctgtgggg
gaaacaggtgtcagaggtactcgaggagaacgaggttatccaggacgtccgggtgcgaaa
ggaacaaagggactggcttcattttcaccctgtgaactcattgagtatgttcgtgaacgc
agcccttgctggaaaggagcccaggcatgtccagtctatcccactgaattagtgtttgcc
ttggatgtatcccaagataccactcccgcaacatttgaacgaatgagagaggtcatcact
gcaattgtaaacagcaccagaacccgagaaagcaattgccctgtgggagccagagtagct
gttgtgtcctacaactccaatacgcaccatctaatccgcttctcagatttcaagaacaag
aaatcgttgctccaagagctcaagagcctttcctaccagagatcttcaagtggacgggac
attggtggatcaatgagatatgttgccaggcatgttttcaagagaactctccagagtcct
aacatgagaaaagttgctgtgttcttcagcaatggccaatctacggatacagtttcaatc
agcacagcagtcctagaatttagggcgttagatattcttccagtggtcatcgcttttaaa
aacgtccctgaggtcaaccgtgccttttcgatggatgactcgggactgtttcaagtcatt
aatattcgtcaggaaagagattatacaacagctttgcaaagattccagtggtgcatactt
tgctatgacaaatgcaaggtgaacgcatcttgcctacgtgatgaaacctcacctcccgct
tatgtagacgctgctttcattttggaaagctcaaggaaagtaagccctcttgaatttgca
aagctgaaggatttcctaagcctctccattgacaactttgatgtttctgctcaaccagag
agcacttcagtaggtgacaggctggctgtggtgagccatgctccaccagatttcaggcct
caaacacagaagaatccagttaaggctgaatttgactttgtaacctttggcagtaaaaag
caaatgaaaaggcatatccaagagtctatccagcagctgaatggagcagctgctcttggc
catgctatacagtggaccattaccaatgtcttcacaggagcacccaaccagaggaaacac
agagctatctttgtgatatctgttggggaaacaagtcgatgggacaaggaggtgttgaaa
gatgcagccctgagagccaaatgccaaggctatgctctatttgtgctctcattggggcat
gagtacaatgtagaacttgaggaactggtcagcagccccacggagcatcatctggtacag
cttgggagatgtcacaaggctgaacttggatatgcagtgaagtttctgaagccatttgta
cgactcctccgaaatgaaatcaacagctatccaccagcacagcttaagagaaaatgttca
gacatcaacacccagaagcctatagaggttcctctgcagtccagatacagcatagcaaag
gatgaaactgtgtccaggagagctcagagactagagacggaatctgaagtttgggaacat
ttgtctggtgattcagtatcccatgaacatttaatcagcagcgaacagcagaccattgta
tttggaaattag
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integrated database retrieval system
