Sphaerodactylus townsendi (Townsend's least gecko): 125443490
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Entry
125443490 CDS
T08213
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125443490 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125443490 (CNOT1)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125443490 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125443490 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
Not1
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
125443490
NCBI-ProteinID:
XP_048371605
LinkDB
All DBs
Position
LG14:28097982..28171128
Genome browser
AA seq
2161 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIENPLHYQKSLKPSPHLFTQLSKVIK
LSKVQEVIFGLALLNSFNPDLRGFAAQFIKQKLPDLLRSYIDADVGGNQEGGFQDIAIEI
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIITQFGVGEVTAAQVARVLGMMART
HSGLADGIPLQSISAPGSGIWSDGRDKNDGTQTHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQVRDSKGLQIVVYGVQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SLGGSAVPHTQSMPGFPPNLGSAFSTPQSPAKAFPPLSTQNQNTPFSGIGGLSSQLPVGG
LTTSSLGIGTGALGLPAVNNDPFVPRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQAPAKTPLAGQVSTIVTTSTTTTTVAKTTITPVGRVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKK
DVKQPEELPPITTTTASTTPATSTTCTTTVPPQPQYSYHDINVYSLGGLAPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNCE
LACCFIQKMAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGILAQPMKQAWATDDVAQIYDKCMTELEQ
HLQSVPHTLPMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVSMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRAQ
AEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEAANTVTKINLLNKVLGIVVGVL
LQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGF
VYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELAKPMQILYKG
TLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDM
C
NT seq
6486 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggc
cccgaggcagacaggcatttactacgctgtctattctcgcatgtggatttcagtggcgat
ggtaaaagcagcggcaaagattttcatcagactcagtttctgatccaggagtgcgcgtca
ctgattacgaagccaaactttatttcgacgctgtcctatgctattgaaaaccctttgcac
tatcagaagagtcttaagccatcacctcatctgttcactcagctgagcaaagtcatcaaa
ttaagcaaggttcaagaggttatttttggccttgcactgctgaactctttcaacccagat
ctgcgaggttttgctgcccagtttattaaacagaagcttccggatcttctgcgttcatac
attgacgcagacgttggtggaaatcaagaaggtggcttccaagacatcgccatagagatt
ttgcacctcctcctttcccatcttctttttgggcagaagggagcctttggggttggacaa
gaacagattgacgctttcctcaaaaccttacgtagagattttccccaggaacgttgccct
gtggtgcttgcaccactcctctaccctgaaaaacgggacattctaatggacaggatcctg
cctgactctggagggattgcaaaaacaatgatggagagttctcttgcagacttcatgcag
gaagttggctacggtttttgtacaagtgtggaagaatgtcgcaacatcatcactcagttt
ggtgtcggggaggtcacagctgcccaggtggccagggttttgggaatgatggctcgaacg
cactcaggattggcagacggtattccattacagtccatctcagcacccggcagtggaatt
tggagtgacggaagagataaaaacgatggaacacaaactcatacgtggaatgtagaggtt
ttgattgacgtgcttaaggagctgaacccgagtttgaacttcaaggaagtaacctatgaa
ctagatcatcctggttttcaagttcgtgatagtaaaggcttgcagattgtggtgtatggt
gtccaaagagggctaggacttgaagtcttcccagttgacctcatctacagaccttggaaa
catgcagaaggccagctctcatttatccaacattccctcattaacccggagatcttctgt
tttgctgactacccctgtcataccgttgccacagatatcttgaaagcaccacctgaggat
gacaatcgagaaattgcaacatggaagagcctggacttgatagagtcgctgctgcggttg
gcggaggtgggacagtatgaacaggtcaagcagctcttcagcttccctattaagcactgt
ccagatatgttggtattggccttactacagatcaacacttcctggcacactttgcggcat
gaactaatctccaccctaatgcccattttccttggcaaccatcccaactctgccatcatc
ttgcattatgcatggcatggccagggccagtctccttcaattcgccaactcatcatgcat
gcgatggcagaatggtacatgaggggggagcagtacgaccaggccaaattatctcgtatc
ctggatgtggcccaagacttgaaggcattgtcaatgctactaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaactagacaaatgg
ctcacagataaaattcgagagcatggggaacccttcatccaagcctgtatgactttctta
aaaagaagatgcccctctatattgggtggccttgccccagaaaaagatcaaccaaaaagt
gctcagcttcctccagagacgttggctactatgctggcttgcttgcaagcttgtgcagga
agcgtctcccaagagctttcggaaactattcttacaatggtagccaactgcagcaatgtt
atgaacaaagctaggcagccaccgcctggagttatgcccaaaggacgtccgcccagtgct
agcagtctggatgccatctctcctgtacagatcgacccgctggctgggatggcatctctt
agtttaggtggttcagcagttccacatacccagagtatgcctggttttcctccaaacctg
ggttcagcctttagtacccctcaatcaccagcaaaagcatttcctccactttctacgcaa
aaccagaatacaccttttagtgggattggcggactctcatcacagcttccagttggtggt
cttacaacaagtagtctgggtataggaactggggccctcggcctccctgcagtgaacaac
gacccctttgtgccaagaaaactgagcacatcaggattgaaccagcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtatggccggaggcaaatcagcactttagc
aaagagattgatgatgaagccaacagttattttcaacgcatttataatcaccctccacat
ccaactatgtctgtagatgaggtgttagaaatgctacagaggtttaaagactccaacatt
aaacgagaacgggaagtatttaactgtatgctgaggaatttgtttgaggagtatcgcttt
ttcccccagtacccagataaagaactacatataacagcctgcctgtttggtgggataata
gagaaaggactggttacatatatggcccttggcctggccttgcgctatgttcttgaagcc
ttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagattgaaggactatccccagtactgtcagcacttggcttctattagtcacttt
atacagttccctcatcacttgcaggagtacattgaatatggacagcaatcaagagatcct
cctgtgaagatgcagggctcaatcaccacccctggaagtattgcacttgctcaagctcag
gcccaggctcaggctccagcaaaaacgcctcttgctggtcaagttagcactatagtaacc
acctctaccacaaccactactgtggccaaaaccacgatcactccagtgggtcgagtcagc
tttaagaaggatgtgccgccatcaattaatacaaccaacattgataccctgctggtggcc
acagatcaaacagagagaattgttgaaccccctgaaaacgtacaagaaaagattgccttt
atcttcaacaacctgtctcaatcaaatatgactcagaaggttgaggagctgaaggaaaca
gtgaaagaagagttcatgccttgggtttcacagtatctggtgatgaagagagttagcatt
gagccaaacttccatagcctctattcgaacttcctcgacacgcttaagaatccagaattc
aacaaaatggtcctcaatgaaacctacagaaatatcaaggtacttctcacatctgataaa
gctgctgccaacttctcggaccgatctctgctgaagaacttgggtcattggttgggaatg
atcacactggcaaagaacaaacccatcttacacacggacttggatgtgaaatcgttgctt
ctggaggcttacgttaaggggcagcaagagctgctgtacgttgtgccatttgttgccaaa
gtcttggaatcgagtgtgagaagcgtggttttcaggcctcccaatccttggaccatggcg
atcatgaatgtactcgcagagttgcaccaggaacacgatctaaaactgaacctgaagttt
gagattgaagtgctctgcaagaaccttgcccttgacatcaacgagctaaaacctggaaac
ctcttgaaagacaaggatcgacttaaaaatctggatgaacagctgtctgctccaaagaag
gatgtgaagcagcctgaagaattgccacccattacgaccaccacggcttctacaacacca
gctaccagcacaacgtgcacaactactgttccaccacagccccagtacagctatcatgat
atcaacgtttactccctaggagggctggctccacatattactcttaatccaactattccc
ttgtttcaagcacacccgcagttaaagcagtgtgtgcgccaggccatcgagcgtgcggtc
caagaacttgtgcatccagtggtggatcggtccataaaaatagccatgactacatgcgag
cagatagtgagaaaggattttgccttggactcggaagagtcacgcatgcgtgtagcggcg
caccacatgatgcgaaatttgactgccggcatggctatgatcacctgtcgggagccattg
ctgatgagcatagctaccaacctgaagaacagctttgctaccgcattgagggctgcttcg
ccacagcagagggagatgatggagcaggcagccgcccagctggctcaggacaactgcgag
ctggcctgctgcttcattcagaagatggcagttgagaaagcaggccctgagatggacaag
cggctggccacagaatttgagcttagaaaacatgccaggcaagagggtcgtaggtactgt
gatcctgtcgtcctgacttaccaggctgagcggatgccggaacagatcagactgaaggtt
ggtggtgtggacccaaagcagctagctgtttatgaagaatttgcacgcaatgtccctggt
ttcttaccaaccaatgacttaactcaacctacagggatcctagctcagcctatgaagcaa
gcctgggcaacagacgacgtcgcgcagatctatgataaatgcatgacagagctggaacag
cacctgcagtctgttcctcacaccctgcccatgaacccgcagacccaagccttacgaagc
ctcttggaggcggtggtcgtggctcgtaactctcgtgacgccattgcagctcttgggctg
ctccagaaggcggttgagggcttgttggatgctactagcggtgcggatgctgatcttctt
ctccgctatcgagagtgtcacttgctcgttttgaaagccttgcaggatggccgtgcttat
ggctctccatggtgcaataagcagatcacaagatgcctgattgaatgtcgagatgaatat
aaatacaatgtagaagctgtagagctgctgatacgtaaccacctagttagcatgcaacag
tatgatcttcacttggctcagtcgatggagaatggcttgaactacatggctgtggcattt
gcaatgcagttggtaaaaatcctcttggtggatgagagaagtgtagctcacataacggaa
gcagatctgttccacaccattgaaactctgatgaggattaatgctcattcccggggaaac
gcaccagaagggttaccacagctgatggaagtggtacgctccaactatgaagccatgatt
gaccgtgctcatggagggccaaactttatgatgcattcgggaatctctcaagcctctgag
tacgatgatccccctggcctgagggagaaggctgaatatctcctgagggaatgggtcaat
ctctaccactctgctgcggccggtcgtgacagtaccaaagcattctctgcgtttgttgga
caggtagagcttttggaaagaaagatgcatcagcaaggaatcctgaagacagacgacttg
atcacgcgattctttcgcctttgcacggaaatgtgtgtggaaattagctaccgggctcaa
gcagagcagcagcacaaccctgctgcaaatcccaccatgatccgtgccaagtgctaccac
aatttggatgcctttgtgcgccttattgctctgctggtgaagcactctggggaggctgcc
aacacagtcactaagatcaacttgctcaacaaggttcttgggatagtggtgggggtcctt
ttgcaggatcatgatgttcgccagagcgaattccagcaactcccttatcaccgcattttc
atcatgctgctgttggaattaaatgctcctgaacatgtcctggaaacaattaattttcag
accctcacagcattctgtaacacgtttcacatcctgagacctacaaaagctcccggtttt
gtttatgcttggttagaattgatctcccaccggatatttattgcaagaatgctggcacac
acaccacagcagaagggctggccaatgtatgcccagctgctgattgacctatttaaatac
ttggctcctttcctgagaaatgtggagcttgccaaacctatgcaaattctctacaagggt
accctgcgtgtgttgctggtcttattgcatgatttcccagaattcctctgtgactaccac
tacgggttctgtgatgtgattcctccaaactgcattcagctaaggaacctgatcttgagt
gccttcccacgaaatatgaggcttccggatcccttcactcccaaccttaaggtggacatg
tgttga
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integrated database retrieval system
