Scyliorhinus torazame (cloudy catshark): 140389635
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Entry
140389635 CDS
T11303
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
stoz04040
]
140389635 (scn1laa)
Ion channels [BR:
stoz04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
140389635 (scn1laa)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
140389635
NCBI-ProteinID:
XP_072330032
LinkDB
All DBs
Position
2:complement(89870831..90351076)
Genome browser
AA seq
1999 aa
AA seq
DB search
MAQPLLAPPGPDSLRLFTRESLAAIERCIAEEKAKRPKERHVDDDENGPKPNRDLEAGKS
LPFIYGDIPPGMVSEPMEDLDPFYSTQKTFIVLNRGKAIFRFSATPALYILSPFNPLRKV
AIKILVHSLFSMLIMCTIMTNCVFMTMDNPPDWAKNVEYTFTGIYTFESLTKILARGFCI
DRFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCVQWPPPDSYFSASNSSLNLNDTL
ANETEFNYDNYTEDKQNHYFLEEAKDALLCGNGSDAGQCPEGYMCLKAGRNPNYGYTSFD
TFSWAFLSLFRLMTQDFWENLYQQTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAY
DEQNQATLEEAVEKEAEFQLMLEQLKKHQEEAQAAAAEAGDGSGRIGLCEMSQSSSDTSK
LSSKSAKERRNRRKKRKQTEQEAEEKDNDEKIHKSESEDNGRRGNGFRFSIDRNCLSYEK
RNSSPHQSLLSIRGSIFSPRRNSRSSIFSFKGRTKDIGSENDFADDEHSTFEDNESRRGS
LFIPRRQGERRSSNISQTSRSSRILPVLPVNGKMHSTVDCNGVVSLAGGPSTPTSPIGRL
LPEVIIDKPATDDNGTNTETDLKKRRTGSHQISMDFLEDPMQRQRALSVASILTNTMEEL
EESRQKCPPCWYKFANTFLIWDCHPHWLKIKEIVHLIVMDPFVDLAITICIVLNTLFMAM
EHYPMTERFENVLTYGNLVFTGIFTGEMIFKIIALDPYYYFQEGWNIFDGIIVSLSLMEL
GLSNVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKEHVCKIDKDCKLPRWHMKDFFHSFLIVFRVLCGEWIETMWDCMEVAGPSM
CLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAMGRIQRGIDYVK
RNVRQVFHTAFIRRKVTEDIKPLDDLHNKKDVYITDHTTVEITKEVDYHKDGNCTTSGIS
SSVGKYNADESDYMSFIHNPSLTVTVPIAAGESDFENVNTEDFTSESDLEGSKEKLAESS
SSEGSTVDRDPPGEGELPEEIPEESMEPDACFTEGCVQKFPYCYVNIKEGKGKSWWNLRK
TCYKIVEHNWFETFIIFMILLSSGALAFEDIYVEQRRTIKTMLEFADKIFTYIFILEMLL
KWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANAMGYSELGAIKSLRTLRALRPLRALSR
FEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGRYYHCINITDGKRFPISI
IDNITDCLQLNETARWKNVKINFDNVGAGYLALLQVATFKGWTDIMYAAVDSRAVKEQPD
YECNLYMYFYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMK
KLGSKKPQKPIPRPLNKIQGMVFDFVTQQVFDITIMILICLNMVTMMVETDDQSIKMDNV
LHWVNMVFIVLFTSECVLKLIALRYYYFTIGWNTFDFVVVILSIVGMFLAEIIEKYFVSP
TLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNF
AYVRKESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCNPTKDNPGSPI
KGDCGNPPVAILFFVSYIIISFLIVINMYIAIILENFSVATEESAEPLSEDDFEMFYEVW
EKFDSDATQFMEYGRLHDFADALEPPLRVAKPNRIQLIAMDLPMVSGDRIHCLDILFAFT
KRVLGEGGEMDALRQQMEERFMASNPSKISYEPITTTLRRKQEHVSATIIQRAFRRYLIR
RTLKQASFMFKEKGKTSELLPGKEEMVIDKFNEISTTDKTDMTPSTTSPPSYDSVTKPEK
AREEKEKEDRGKDVRAYKK
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagccactgcttgcaccgccaggaccagacagcctccgcctttttacccgagaa
tctcttgcagctattgagagatgcattgcagaggaaaaagccaagagacccaaggaacgt
catgtggatgatgatgaaaatggccccaagccaaatcgtgacttggaagccggtaaatca
ctcccatttatttacggtgacatacctccagggatggtttctgagccaatggaagacctg
gatccattttacagcacacaaaaaacctttatagtattgaacagagggaaggcaatcttc
cgatttagtgccacacctgccttgtacattttaagtcctttcaatcctttaaggaaagta
gctattaagattttggtacattcattgttcagcatgcttatcatgtgcactattatgacg
aattgtgtgtttatgaccatggataatcctccagactgggcgaagaatgtagagtacacc
ttcactggtatttacacatttgaatcgcttacaaaaattctcgcaaggggcttctgtata
gatcgtttcacttttcttcgagatccatggaactggctggatttcagtgtcattcttatg
gcatatgtgacagaatttgtggacctgggcaatgtctccgcgttgagaacattcagagtt
ctccgagcgttgaaaacaatttcagtcattccaggtctcaaaaccatcgtgggtgcgctg
atccagtcagtgaagaagctgtccgatgtaatgattctgactgttttttgtttgagcgtg
tttgcactaatagggctacaactgttcatgggaaacctaaaacataaatgcgtacaatgg
ccaccacctgacagctattttagtgcaagtaacagctctttaaacctgaatgatacactg
gcgaatgagacagaattcaactatgataactacaccgaagataaacaaaatcactatttc
ttggaagaagccaaagatgcactactttgtggtaatggctcagatgctggtcagtgtcct
gagggatatatgtgtctgaaagctggaaggaacccgaattatggttataccagctttgac
acatttagttgggcattcttatcattatttcggctgatgactcaggacttttgggaaaac
ctttaccagcagaccctgagagctgctggcaaaacatatatgatattttttgtgctggtc
atcttcctgggatctttctatttggtcaatttgattctggctgttgttgccatggcctat
gacgagcaaaaccaggctacattagaggaagctgtggagaaagaggcagaatttcagctg
atgcttgaacagcttaaaaaacatcaagaagaagctcaggctgctgcagctgaggcaggg
gatggaagtggacgaattggactttgtgaaatgtcgcagagttcctcggatacatcaaag
ctcagttcaaagagtgccaaggagagaaggaacagaaggaagaaaaggaaacaaaccgag
caagaagccgaggaaaaggataatgatgaaaagattcacaaatcggaatcagaggataat
ggaagaagagggaatggttttcgattttccattgatcgtaactgtctttcttatgaaaag
agaaattcctccccacatcagtcactgttaagtattcgtggatccatcttttctccaagg
cgcaatagcagaagcagcatcttcagtttcaaaggacggactaaagatatagggtcagaa
aatgattttgctgatgatgaacacagcacttttgaagacaatgaaagcagaaggggctca
ctctttattccacggaggcagggtgagagacgcagcagtaacattagtcagaccagtagg
tcctccaggatactaccagtgcttccagtgaatgggaagatgcacagcacagtggactgc
aatggagtggtttcacttgccggtggaccttcaactccaacgtcacccattggacgactt
ctgccagaggtgataatagataagccagctactgatgacaatggtactaacacagaaaca
gaccttaagaagaggcgaacaggatctcatcagatttctatggatttcctggaagatcct
atgcaaagacagagagctttaagtgtggccagtattctcacaaatactatggaagaactt
gaagaatctcggcagaaatgtcccccatgctggtataaatttgcaaataccttcttgatc
tgggactgccatccacactggcttaaaataaaagaaattgttcatttaattgtgatggac
ccatttgtggatctcgctattacaatctgtattgtgctgaacactctttttatggccatg
gaacattacccaatgacagaaagatttgaaaatgtgctcacatatggaaacttggtattt
actggtatctttaccggggaaatgattttcaaaattatagccctggatccttactattac
ttccaagaaggatggaacatttttgatggcatcattgtgagtctcagtctaatggaactt
ggtctttctaatgtggaaggactatccgtgctgcgatctttccgattgctcagagttttt
aaattggcaaaatcatggccaacactgaacatgctgattaaaattattggcaactcagtg
ggtgctttgggcaacttgactttggtgttagccatcattgtcttcatctttgctgtggtg
ggcatgcaactcttcggtaaaagctacaaggagcatgtctgtaaaattgacaaggactgt
aaactgcctcgctggcacatgaaagacttctttcattcctttctaatcgtgttccgtgtg
ttgtgtggagaatggattgagacaatgtgggactgcatggaagtagctggtccgtctatg
tgcctcatcgtctttatgatggtcatggtaattggtaatcttgtggtattgaatttattt
ttggctttgttactgagctcgttcagtgctgacaaccttgctgctacagatgatgacagt
gaaatgaataatttacagattgctatggggaggatacagagaggcattgattatgtaaaa
agaaatgtgcgacaagtttttcacacagcctttatcaggaggaaagtcacagaagacatc
aaacctcttgatgacttgcataacaagaaggatgtatacatcactgatcacacaacagtt
gaaatcactaaggaggttgactatcataaggatggaaattgcaccaccagtggaataagc
agtagtgttgggaagtacaatgcagacgaaagtgactacatgtcctttattcacaatcca
agtctcactgttactgtaccaatagctgcgggagaatcagactttgaaaacgtaaacacg
gaagactttaccagtgaatcagacctggaaggaagcaaagagaaactggctgaaagcagc
tcatctgaagggagcacagttgacagggatccacctggagagggggaattaccagaagaa
ataccagaagaatccatggagcctgacgcatgctttactgaaggatgtgtgcaaaaattc
ccatactgctacgtcaacataaaagagggcaagggcaaatcatggtggaacctccgaaag
acctgctacaaaatagtggaacataattggtttgaaacattcattattttcatgattctt
ctcagcagtggtgccctggcctttgaagatatttacgttgagcaaaggcggaccattaag
acaatgctcgaatttgccgataaaatattcacctacattttcattctggaaatgctgctg
aagtgggtggcttacggttttgtgaagtatttcactaatgcttggtgttggctggacttc
ctcattgttgatgtctctttagtgagccttgtagctaatgccatgggctactcggagcta
ggtgctattaagtccctgaggacactaagagctttgagacctctaagagccttatcacga
tttgaaggcatgagggtggtggtcaatgcacttcttggagcaattccttccatcatgaat
gtgctgcttgtctgcctgatattctggctcattttcagtataatgggtgtgaatcttttc
gctggaaggtactaccactgtatcaacataactgatggaaagagattccccatcagcatt
attgacaatataactgattgtcttcagcttaatgaaacggcgcgatggaaaaacgtaaag
atcaactttgacaatgttggagctggctaccttgctttactacaagtggcaacatttaaa
ggatggacggatatcatgtacgcagctgttgattcaagagctgtgaaggaacaaccggac
tatgaatgcaatctgtacatgtatttttacttcgttattttcatcatctttggatctttc
ttcaccttaaatttgtttattggtgtgattattgacaacttcaatcaacagaagaaaaag
tttggaggtcaagatattttcatgactgaagaacaaaagaaatattacaatgctatgaaa
aaacttggctccaagaaaccacagaaaccaatacccaggcccttgaacaagatccaagga
atggtgtttgattttgtaacccagcaagtctttgatatcaccatcatgattctcatctgc
cttaacatggtcaccatgatggtggagacagatgatcaaagtatcaagatggataacgtc
ttacattgggtcaacatggttttcattgtccttttcacaagcgagtgtgtccttaaactg
attgcactccgctattattactttacaataggctggaatacttttgactttgtggtggtc
attctttcaattgtaggcatgttccttgctgaaatcattgaaaaatactttgtgtcacca
acattattcagagttatccgacttgccagaattggtcgcatcctgcgtttaatcaagggt
gctaagggaatccgtacactgctgtttgcattgatgatgtctcttcctgctttgttcaac
attggtctgttgctcttcttagtcatgttcatttatgccatttttgggatgtctaatttt
gcttatgtgaggaaagagtctggcattgatgatatgttcaactttgaaacatttgggaac
agcatgatatgcttgtttcagatcaccacatctgctggctgggatggcttactggctcca
attctaaacagtgggccaccagactgtaacccaacgaaagataatccaggcagccctatc
aaaggagattgtggtaacccaccagttgcaattttattctttgtcagttacatcataata
tctttcttgattgtcataaatatgtacattgctattattttggaaaattttagtgttgct
actgaggaaagtgctgaaccattgagtgaggatgactttgagatgttttatgaagtttgg
gaaaaatttgattcagatgcaactcaatttatggagtatggtagattgcatgattttgca
gatgccttggaaccacctcttcgtgttgcaaaacccaacagaatacaacttatagctatg
gacctgcccatggttagtggagatagaattcactgtcttgatatattgtttgcatttaca
aagcgtgtgctgggtgagggtggagaaatggatgctcttcgacaacagatggaagaacgc
tttatggcatccaatccatccaagatatcctatgagccaattacaaccactctacggcgt
aaacaggaacatgtttctgcaactataattcagagagctttcagacgatatctgattagg
cgaacattaaaacaagcctctttcatgttcaaagaaaaaggtaaaacaagtgagctttta
cctggcaaagaagaaatggtaatcgataagtttaatgaaatctccactacagacaaaact
gatatgactccttctaccacatcaccaccgtcctatgacagtgtaacaaaaccagagaaa
gccagagaggagaaagaaaaagaagataggggcaaagatgtaagggcatataaaaagtaa
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integrated database retrieval system
