Scyliorhinus torazame (cloudy catshark): 140406352
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Entry
140406352 CDS
T11303
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03020
RNA polymerase
stoz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
140406352
09124 Replication and repair
03420 Nucleotide excision repair
140406352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stoz03021
]
140406352
03400 DNA repair and recombination proteins [BR:
stoz03400
]
140406352
Enzymes [BR:
stoz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
140406352
Transcription machinery [BR:
stoz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
140406352
DNA repair and recombination proteins [BR:
stoz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
140406352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
140406352
NCBI-ProteinID:
XP_072350549
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MYDPDEGEDTQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDAPPIDLQAEAQHTTGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL
TYSAPLYVDITKTVIKEGEEQMQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECP
LDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVS
MLARGGQGVRKSAIGQRIVATLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMM
EMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEILQKEVLPHVGVSDFCE
TKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIY
SQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPDQLMTTLRKLRRQMDIIV
SEVSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVA
SGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINS
IVAIASYTGYNQEDSVIMNRSAVDRGYFRSVFYRSYKEQESKKGFDQEEVFERPSRETCQ
GMRHAIYEKLDEDGLIAPGVRVSGDDVIIGKTVTLPENDDELESINRRYTKRDCSTFLRT
SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC
EGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDY
GYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGR
SRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYQVHVCNLCGLMAIANTRTHTYECR
GCRNKTQVRVKHSEVQTIKILAFRNF
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatccggacgagggcgaggatacacaatatgatgaagatgatgatgaaatcacc
ccagatttgtggcaggaggcatgttggattgttatcagctcatattttgatgagaaaggt
ttggttcggcaacagttggattcatttgatgaattcatccaaatgtcagtgcagagaatt
gtggaagatgctcctccaatagatctccaagctgaagctcaacatactactggggaagta
gaagagccgcccaggttcttactaaaatttgaacagatctatttatccaaaccaacacat
tgggaaagggatggggcaccatctccaatgatgccaaatgaagctaggttgcgcaacctt
acgtattcagcacctctctatgtagatatcacaaagacagtgattaaggagggagaggag
cagatgcaaactcagcatcagaagacgtttataggaaaaattcctatcatgcttcgatcc
acctattgtcttctcagcggtttgacggatcgtgatctctgtgagctcaatgagtgccca
ctggaccctggtggctatttcatcatcaatggatcagaaaaggtcctaattgcacaggaa
aagatggcgacaaacactgtgtacgtgtttgcaaagaaagactccaaatatgcatataca
ggagagtgtcggtcctgtttagagaattcatctcgtcctaccagtaccatctgggtcagc
atgttagcaagaggaggacagggtgtaagaaaaagtgcaataggccagagaattgttgcc
acactaccatatatcagacaggaagttcccataattattgtgtttcgagctttgggattt
gtgtctgatcgagacattttggagcacattatttatgattttgatgaccctgaaatgatg
gaaatggtgaagccttccctggatgaagcatttgttatccaggagcaaaatgttgcattg
aattttattggttcaagaggtgcaaaacctggtgttacaaaggagaagagaattaaatac
gcaaaggaaattctacagaaggaagttctgccacatgttggagtcagtgacttttgtgag
actaagaaagcatatttcttgggttacatggttcatagattactgctagctgctttaggc
cgaagagaattggatgacagagatcattatgggaacaaaaggttggacctcgctggacca
ttgcttgcgttcctgtttagaggaatgtttaaaaacctacttaaagaagtacggatatac
tcccagaagttcatagacagagggaaagatttcaacttggaattagcaattaaaacacgt
attatttctgatggtttaaaatattccctagcaacaggaaattggggcgatcaaaagaaa
gctcatcaagccagagctggtgtatctcaggtgttgaaccgtttgacctttgcttcaact
ctctctcatcttcgtcgtcttaactctccaattggaagagatggaaagttagcaaaacct
aggcagctgcacaatactttatggggtatgatttgccctgctgagacaccagagggtcat
gctgtcggattagtgaaaaacctggctttgatggcttacatttctgtaggatctcagccc
tcacccattttggaattcttggaggagtggagcatggaaaatcttgaagaaatctctcct
gctgcgattgcagatgctacaaagatttttgtcaacggttgctgggttggaatacataaa
gatcctgaccagctgatgactacactaaggaagctgaggcgtcagatggacatcattgta
tctgaggtgtccatggtcagagacattcgtgagcgtgagattcggatttacacagatgca
ggtagaatttgtcggccacttctgattgtagaaaaacagaagctactgttgaaaaagcgg
catattgatcaattgaaagaacgagagtacaacaattatagttggcaggatcttgtggcc
agtggtgtggtggagtacattgatacactggaagaggagaccgtaatgctagccatgacc
ccagatgacttgcaggaaaagggcgttgcatattgttcaacgtatacacattgtgagatt
cacccatcaatgattcttggtgtttgtgcatcaattattccatttcctgaccataatcag
tctcccagaaatacatatcaatctgctatgggtaaacaagctatgggagtttatattacg
aactttcatgtgcgtatggacaccctagcccatgtactgtactacccacaaaagccactt
gttacaacccgttctatggagtatctgcgattcagagagctaccagccggtataaactct
attgtagcgattgcttcatatactggttacaatcaagaagattctgtcatcatgaatcgt
tctgcagtagacaggggctatttcaggtctgtgttctaccgctcgtacaaagaacaagaa
tcaaagaaaggttttgaccaagaggaagtatttgagagaccttctagggaaacttgccag
ggtatgagacatgctatttatgagaagctagatgaagatgggctgatagcgcctggtgtg
cgtgtgtcaggagatgatgtaatcattggtaaaaccgtaacactgccagaaaacgatgac
gagctggagagcataaatcgacggtacacgaagagagactgcagcaccttcctacggacc
agtgagactggtattgtggatcaggtcatggtgacgctaaaccaagaaggatacaaattt
tgcaaaattagggtacgatctgtccgaattccacaaattggagacaaatttgccagtcgc
catggccagaagggtacgtgtggtatccagtacagacaagaggatatgccattcacgtgt
gaaggtatcaccccggatattataatcaatccacatgccattccttctcgaatgacagta
ggtcacttgattgagtgtctgcaagggaaggtgtcagcaaataagggtgaaattggtgac
gctaccccctttaatgacgccgttaatgtacagaagatttctaacctgttatcagactat
ggataccacctccgaggcaatgaggttctatataatgggtttacagggcgtaaacttaca
tcgcagatctttattggacctacttactaccagcgcctgaaacacatggtagatgacaaa
attcattcccgtgctcgaggacctgttcaaatccttaacagacagccaatggagggtaga
tctcgtgacggcggtctacgttttggggagatggaacgagattgtcagattgctcacggt
gcagcccagtttttgagagagaggctatttgaggtttctgatccttatcaggtgcatgta
tgcaatctttgtggactcatggcgattgccaataccaggacacacacttacgaatgcaga
ggatgtcgtaacaaaactcaggtacgtgtcaaacattctgaagtacagacaataaagata
ttggctttccgtaatttctag
DBGET
integrated database retrieval system
