KEGG   Scyliorhinus torazame (cloudy catshark): 140428289
Entry
140428289         CDS       T11303                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
stoz  Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:stoz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140428289 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stoz03019]
    140428289 (cstf1)
Messenger RNA biogenesis [BR:stoz03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     140428289 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_SCAP WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Ge1_WD40 Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Cytochrom_D1 DUF7099 Beta-prop_NWD2_C Frtz Beta-prop_SPT8 Beta-prop_WDR11_1st VPS8_N
Other DBs
NCBI-GeneID: 140428289
NCBI-ProteinID: XP_072370695
LinkDB
Position
8:180026710..180077687
AA seq 431 aa
MFRPKVTLKDRQHLYRLIIGQLLYDGYMNIASNLINEIKPPSVCSPSEQLLHLAKIGMEN
DDNTVQYAIGRSDTVAPGTGIDMEFDADVQTMSPEAAEYETCYVTSHKGPCRIATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSKDYTLKLFDYSKPSAKRAFKYLQEAEMLRSISFHPSGDYILVGTQHPT
LRLYDVNTFQCFVSSNPRDQHTDAVCAVSYNPSANMYVTCSKDGSIKLWDGVSNRCITTY
EKAHDGAEVCSIIFSRNSKYVLSSGKDSIVKLWEISTGRTMVKYTGAGLSGRQTHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRSSTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtttcgacctaaagttactctgaaagaccgacagcacctttacagactcattattggc
cagctgctgtacgatggatacatgaacattgcatcaaacctgatcaatgagatcaaacca
ccatcggtttgctctccctctgagcaactattgcatcttgccaagattggaatggaaaat
gacgacaacactgtccagtatgctattgggcggtcagacactgtggctcctggtacgggc
attgacatggaatttgatgctgatgtacagactatgtccccagaggccgctgagtatgag
acatgctacgtgacatcgcacaaagggccatgccgtattgccacctatagccgagatgga
cagttgattgctacaggctctgctgatgcatccatcaagattctggatactgagaggatg
ctagcaaagagtgctatgcccattgaggtgatgatgaatgagacagcacagcagaacatg
gaaaaccatcccgtaattcgcacgctctacgatcatgtagatgaggttacatgtcttgct
ttccaccccacagaacagattctagcatcggggtcaaaggactacacattgaaactcttt
gactattctaaaccctcagcaaaaagggcattcaagtaccttcaggaagcagaaatgctg
cgctccatctcctttcacccctctggagattacattctagtgggaacgcagcacccgact
ttgcgattgtatgatgtcaatacattccagtgttttgtatcaagcaatcctcgtgatcaa
cacacagatgctgtctgtgctgtgagctataaccccagtgccaacatgtatgtgacatgc
agtaaagatggcagcatcaagctgtgggatggtgtatcgaatcgctgcatcaccacctat
gaaaaagcacatgatggtgcagaggtgtgctctattatattctcaagaaattcaaagtat
gttttgtcaagtggaaaggattctatcgtgaagctatgggaaatatcaactgggcgcaca
atggttaaatacacaggagcaggattgagtggcagacagacgcaccgcacgcaggctgtc
ttcaaccatactgaagattatgtgcttctccctgatgaaaggacaataagcctttgctgc
tgggactcgcgtacagctgagcgcaagaatctcctatctcttggtcacaacaatattgtt
cgctgcattgtccactctcctaccaatcctggtttcatgacctgcagcgatgacttcaga
gccaggttttggtatagaagatccagcactgattga

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